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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
53501-53550 / 86044 show all
eyeh-varpipeSNPtv*homalt
99.9630
99.9676
99.9583
19.9401
37700112237116515557
36.7742
eyeh-varpipeSNPtvHG002complexvar*
99.7847
99.8883
99.6813
20.5762
245880275235205752120
15.9574
eyeh-varpipeSNPtvHG002complexvarhet
99.6993
99.8812
99.5181
20.4147
15055517914248069071
10.2899
eyeh-varpipeSNPtvHG002complexvarhetalt
99.6700
99.6774
99.6626
29.8422
309135451211
91.6667
eyeh-varpipeSNPtvHG002complexvarhomalt
99.9220
99.9001
99.9440
20.4163
9501695891805038
76.0000
eyeh-varpipeSNPtvHG002compoundhet*
97.1567
99.0474
95.3368
45.3099
883885717635178
22.2222
eyeh-varpipeSNPtvHG002compoundhethet
92.5346
98.5876
87.1819
61.1401
460766188427744
15.8845
eyeh-varpipeSNPtvHG002compoundhethetalt
99.9052
99.8840
99.9265
25.0046
8611407932
66.6667
eyeh-varpipeSNPtvHG002compoundhethomalt
96.9051
99.4687
94.4704
53.4614
33701812137132
45.0704
eyeh-varpipeSNPtvdecoy*
0.0000
0.0000
100.0000
99.9914
00400
eyeh-varpipeSNPtvdecoyhet
0.0000
0.0000
100.0000
99.9939
00200
eyeh-varpipeSNPtvdecoyhetalt
0.0000
100.0000
00000
eyeh-varpipeSNPtvdecoyhomalt
0.0000
0.0000
100.0000
99.9851
00200
eyeh-varpipeSNPtvfunc_cds*
94.7737
99.9771
90.0850
32.1750
4370143434780
0.0000
eyeh-varpipeSNPtvfunc_cdshet
91.6856
99.9624
84.6746
34.5435
2656126414780
0.0000
eyeh-varpipeSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
67.8571
1001800
eyeh-varpipeSNPtvfunc_cdshomalt
100.0000
100.0000
100.0000
26.3664
17040168400
eyeh-varpipeSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
91.5507
98.2850
85.6800
74.8152
149026143023916
6.6946
eyeh-varpipeSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
88.9665
98.0847
81.3995
77.6081
973199192107
3.3333
eyeh-varpipeSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
100.0000
91.7431
00900
eyeh-varpipeSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
96.5573
98.6641
94.5386
64.0244
5177502299
31.0345
eyeh-varpipeSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.1234
99.6134
96.6774
60.9972
275711072612989885
9.4655
eyeh-varpipeSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
97.3719
99.6869
95.1620
62.9872
17513551638583363
7.5630
eyeh-varpipeSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
99.7015
100.0000
99.4048
74.4681
13033421
50.0000
eyeh-varpipeSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4099
99.4850
99.3350
55.8574
100455294106321
33.3333
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
91.2302
99.3206
84.3587
81.4184
144729913726254573
2.8684
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
87.1298
99.3978
77.5574
83.2455
9078558484245550
2.0367
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
99.3243
100.0000
98.6577
87.6860
15014721
50.0000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.7434
99.1886
98.3021
75.3952
53794450958822
25.0000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
94.2388
99.8503
89.2244
68.0061
1334213001574
2.5478
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
91.4222
100.0000
84.1998
71.2990
85508261553
1.9355
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
100.0000
86.2745
00700
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.5789
99.5842
99.5736
56.7742
479246721
50.0000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
95.6922
99.9080
91.8178
68.6059
2172220761853
1.6216
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
93.5518
100.0000
87.8849
70.8431
1387013131813
1.6575
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
85.8696
101300
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.6073
99.7455
99.4695
62.0342
784275040
0.0000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
96.2658
99.8611
92.9204
71.7174
1438213651041
0.9615
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
94.4475
100.0000
89.4792
73.5318
91408591011
0.9901
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
87.5000
10800
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.5100
99.6190
99.4012
66.6667
523249830
0.0000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
73.1615
86.6667
63.2979
89.1767
143221196911
15.9420