PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
53201-53250 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 85.8733 | 81.0734 | 91.2773 | 61.1380 | 287 | 67 | 293 | 28 | 27 | 96.4286 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 86.8556 | 84.1808 | 89.7059 | 59.6838 | 149 | 28 | 183 | 21 | 20 | 95.2381 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 80.4747 | 72.9412 | 89.7436 | 60.2041 | 62 | 23 | 35 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | SNP | tv | map_l100_m0_e0 | * | 98.4300 | 98.7008 | 98.1606 | 72.2063 | 10940 | 144 | 10940 | 205 | 38 | 18.5366 | |
| gduggal-bwafb | SNP | tv | map_l100_m0_e0 | het | 97.9160 | 98.5600 | 97.2803 | 74.2359 | 7118 | 104 | 7118 | 199 | 34 | 17.0854 | |
| gduggal-bwafb | SNP | tv | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.9524 | 16 | 0 | 16 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l100_m0_e0 | homalt | 99.3993 | 98.9600 | 99.8426 | 67.1804 | 3806 | 40 | 3806 | 6 | 4 | 66.6667 | |
| gduggal-bwafb | SNP | tv | map_l100_m1_e0 | * | 98.8766 | 99.1511 | 98.6037 | 68.5198 | 24293 | 208 | 24293 | 344 | 55 | 15.9884 | |
| gduggal-bwafb | SNP | tv | map_l100_m1_e0 | het | 98.4524 | 99.0335 | 97.8781 | 70.7160 | 15268 | 149 | 15268 | 331 | 48 | 14.5015 | |
| gduggal-bwafb | SNP | tv | map_l100_m1_e0 | hetalt | 98.7654 | 97.5610 | 100.0000 | 76.3314 | 40 | 1 | 40 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l100_m1_e0 | homalt | 99.6065 | 99.3586 | 99.8555 | 63.7543 | 8985 | 58 | 8985 | 13 | 7 | 53.8462 | |
| gduggal-bwafb | SNP | tv | map_l100_m2_e0 | * | 98.8866 | 99.1651 | 98.6097 | 70.4745 | 24824 | 209 | 24824 | 350 | 55 | 15.7143 | |
| gduggal-bwafb | SNP | tv | map_l100_m2_e0 | het | 98.4689 | 99.0556 | 97.8891 | 72.5475 | 15628 | 149 | 15628 | 337 | 48 | 14.2433 | |
| gduggal-bwafb | SNP | tv | map_l100_m2_e0 | hetalt | 98.7952 | 97.6190 | 100.0000 | 78.0749 | 41 | 1 | 41 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l100_m2_e0 | homalt | 99.6083 | 99.3597 | 99.8582 | 65.9435 | 9155 | 59 | 9155 | 13 | 7 | 53.8462 | |
| gduggal-bwafb | SNP | tv | map_l100_m2_e1 | * | 98.8936 | 99.1694 | 98.6194 | 70.5239 | 25073 | 210 | 25073 | 351 | 56 | 15.9544 | |
| gduggal-bwafb | SNP | tv | map_l100_m2_e1 | het | 98.4812 | 99.0651 | 97.9041 | 72.6029 | 15789 | 149 | 15789 | 338 | 49 | 14.4970 | |
| gduggal-bwafb | SNP | tv | map_l100_m2_e1 | hetalt | 98.8235 | 97.6744 | 100.0000 | 77.6596 | 42 | 1 | 42 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l100_m2_e1 | homalt | 99.6066 | 99.3550 | 99.8595 | 65.9755 | 9242 | 60 | 9242 | 13 | 7 | 53.8462 | |
| gduggal-bwafb | SNP | tv | map_l125_m0_e0 | * | 98.0737 | 98.2808 | 97.8675 | 77.6619 | 6517 | 114 | 6517 | 142 | 29 | 20.4225 | |
| gduggal-bwafb | SNP | tv | map_l125_m0_e0 | het | 97.4938 | 98.1141 | 96.8813 | 79.0298 | 4318 | 83 | 4318 | 139 | 26 | 18.7050 | |
| gduggal-bwafb | SNP | tv | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.1538 | 9 | 0 | 9 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l125_m0_e0 | homalt | 99.2297 | 98.6042 | 99.8632 | 74.1727 | 2190 | 31 | 2190 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | SNP | tv | map_l125_m1_e0 | * | 98.6420 | 98.8699 | 98.4152 | 72.8937 | 15835 | 181 | 15835 | 255 | 50 | 19.6078 | |
| gduggal-bwafb | SNP | tv | map_l125_m1_e0 | het | 98.1591 | 98.7359 | 97.5891 | 74.7511 | 9998 | 128 | 9998 | 247 | 44 | 17.8138 | |
| gduggal-bwafb | SNP | tv | map_l125_m1_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 76.9841 | 29 | 1 | 29 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l125_m1_e0 | homalt | 99.4861 | 99.1126 | 99.8624 | 68.8267 | 5808 | 52 | 5808 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | SNP | tv | map_l125_m2_e0 | * | 98.6658 | 98.8902 | 98.4424 | 74.7627 | 16306 | 183 | 16306 | 258 | 51 | 19.7674 | |
| gduggal-bwafb | SNP | tv | map_l125_m2_e0 | het | 98.2005 | 98.7742 | 97.6335 | 76.4784 | 10314 | 128 | 10314 | 250 | 45 | 18.0000 | |
| gduggal-bwafb | SNP | tv | map_l125_m2_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 79.7203 | 29 | 1 | 29 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l125_m2_e0 | homalt | 99.4828 | 99.1025 | 99.8660 | 70.9836 | 5963 | 54 | 5963 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | SNP | tv | map_l125_m2_e1 | * | 98.6792 | 98.9014 | 98.4580 | 74.8361 | 16474 | 183 | 16474 | 258 | 51 | 19.7674 | |
| gduggal-bwafb | SNP | tv | map_l125_m2_e1 | het | 98.2193 | 98.7871 | 97.6581 | 76.5519 | 10425 | 128 | 10425 | 250 | 45 | 18.0000 | |
| gduggal-bwafb | SNP | tv | map_l125_m2_e1 | hetalt | 98.3051 | 96.6667 | 100.0000 | 79.7203 | 29 | 1 | 29 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l125_m2_e1 | homalt | 99.4877 | 99.1110 | 99.8673 | 71.0512 | 6020 | 54 | 6020 | 8 | 6 | 75.0000 | |
| gduggal-bwafb | SNP | tv | map_l150_m0_e0 | * | 97.8800 | 97.8917 | 97.8683 | 82.0892 | 4086 | 88 | 4086 | 89 | 22 | 24.7191 | |
| gduggal-bwafb | SNP | tv | map_l150_m0_e0 | het | 97.3551 | 97.7489 | 96.9644 | 82.8486 | 2779 | 64 | 2779 | 87 | 20 | 22.9885 | |
| gduggal-bwafb | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4444 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l150_m0_e0 | homalt | 99.0129 | 98.1928 | 99.8469 | 80.0489 | 1304 | 24 | 1304 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | SNP | tv | map_l150_m1_e0 | * | 98.4669 | 98.5887 | 98.3454 | 76.8340 | 10758 | 154 | 10758 | 181 | 38 | 20.9945 | |
| gduggal-bwafb | SNP | tv | map_l150_m1_e0 | het | 97.9431 | 98.3732 | 97.5168 | 78.3908 | 6833 | 113 | 6833 | 174 | 33 | 18.9655 | |
| gduggal-bwafb | SNP | tv | map_l150_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 82.4074 | 19 | 1 | 19 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l150_m1_e0 | homalt | 99.4020 | 98.9863 | 99.8211 | 73.3556 | 3906 | 40 | 3906 | 7 | 5 | 71.4286 | |
| gduggal-bwafb | SNP | tv | map_l150_m2_e0 | * | 98.5004 | 98.6262 | 98.3749 | 78.4095 | 11199 | 156 | 11199 | 185 | 38 | 20.5405 | |
| gduggal-bwafb | SNP | tv | map_l150_m2_e0 | het | 97.9956 | 98.4280 | 97.5670 | 79.8007 | 7138 | 114 | 7138 | 178 | 33 | 18.5393 | |
| gduggal-bwafb | SNP | tv | map_l150_m2_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 83.8983 | 19 | 1 | 19 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | map_l150_m2_e0 | homalt | 99.4097 | 98.9958 | 99.8271 | 75.2959 | 4042 | 41 | 4042 | 7 | 5 | 71.4286 | |
| gduggal-bwafb | SNP | tv | map_l150_m2_e1 | * | 98.5152 | 98.6437 | 98.3871 | 78.4497 | 11346 | 156 | 11346 | 186 | 38 | 20.4301 | |
| gduggal-bwafb | SNP | tv | map_l150_m2_e1 | het | 98.0150 | 98.4486 | 97.5853 | 79.8450 | 7234 | 114 | 7234 | 179 | 33 | 18.4358 | |