PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52851-52900 / 86044 show all | |||||||||||||||
| gduggal-bwafb | SNP | * | map_l150_m1_e0 | * | 98.6339 | 98.5952 | 98.6726 | 76.5153 | 30179 | 430 | 30179 | 406 | 107 | 26.3547 | |
| gduggal-bwafb | SNP | * | map_l150_m1_e0 | het | 98.1968 | 98.3951 | 97.9994 | 78.1832 | 19006 | 310 | 19006 | 388 | 96 | 24.7423 | |
| gduggal-bwafb | SNP | * | map_l150_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 82.4074 | 19 | 1 | 19 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | map_l150_m1_e0 | homalt | 99.3896 | 98.9444 | 99.8389 | 72.9039 | 11154 | 119 | 11154 | 18 | 11 | 61.1111 | |
| gduggal-bwafb | SNP | * | map_l150_m2_e0 | * | 98.6575 | 98.6343 | 98.6808 | 78.1008 | 31417 | 435 | 31417 | 420 | 107 | 25.4762 | |
| gduggal-bwafb | SNP | * | map_l150_m2_e0 | het | 98.2282 | 98.4453 | 98.0121 | 79.6044 | 19820 | 313 | 19820 | 402 | 96 | 23.8806 | |
| gduggal-bwafb | SNP | * | map_l150_m2_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 83.8983 | 19 | 1 | 19 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | map_l150_m2_e0 | homalt | 99.4033 | 98.9657 | 99.8448 | 74.8531 | 11578 | 121 | 11578 | 18 | 11 | 61.1111 | |
| gduggal-bwafb | SNP | * | map_l150_m2_e1 | * | 98.6663 | 98.6464 | 98.6862 | 78.1729 | 31774 | 436 | 31774 | 423 | 108 | 25.5319 | |
| gduggal-bwafb | SNP | * | map_l150_m2_e1 | het | 98.2410 | 98.4629 | 98.0200 | 79.6828 | 20050 | 313 | 20050 | 405 | 97 | 23.9506 | |
| gduggal-bwafb | SNP | * | map_l150_m2_e1 | hetalt | 97.4359 | 95.0000 | 100.0000 | 84.0336 | 19 | 1 | 19 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | map_l150_m2_e1 | homalt | 99.4055 | 98.9685 | 99.8465 | 74.9037 | 11705 | 122 | 11705 | 18 | 11 | 61.1111 | |
| gduggal-bwafb | SNP | * | map_l250_m0_e0 | * | 97.1993 | 96.7213 | 97.6821 | 93.5570 | 2065 | 70 | 2065 | 49 | 15 | 30.6122 | |
| gduggal-bwafb | SNP | * | map_l250_m0_e0 | het | 96.5356 | 96.2151 | 96.8583 | 93.6158 | 1449 | 57 | 1449 | 47 | 13 | 27.6596 | |
| gduggal-bwafb | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | * | map_l250_m0_e0 | homalt | 98.7971 | 97.9332 | 99.6764 | 93.3875 | 616 | 13 | 616 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | SNP | * | map_l250_m1_e0 | * | 97.6861 | 97.3276 | 98.0471 | 89.3479 | 7029 | 193 | 7029 | 140 | 38 | 27.1429 | |
| gduggal-bwafb | SNP | * | map_l250_m1_e0 | het | 97.0310 | 96.9085 | 97.1537 | 89.8249 | 4608 | 147 | 4608 | 135 | 33 | 24.4444 | |
| gduggal-bwafb | SNP | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.5484 | 4 | 0 | 4 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | map_l250_m1_e0 | homalt | 98.9560 | 98.1324 | 99.7936 | 88.2570 | 2417 | 46 | 2417 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | SNP | * | map_l250_m2_e0 | * | 97.8174 | 97.4762 | 98.1609 | 89.8565 | 7686 | 199 | 7686 | 144 | 38 | 26.3889 | |
| gduggal-bwafb | SNP | * | map_l250_m2_e0 | het | 97.2051 | 97.0928 | 97.3176 | 90.2537 | 5043 | 151 | 5043 | 139 | 33 | 23.7410 | |
| gduggal-bwafb | SNP | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7536 | 5 | 0 | 5 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | map_l250_m2_e0 | homalt | 99.0054 | 98.2130 | 99.8108 | 88.9664 | 2638 | 48 | 2638 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | SNP | * | map_l250_m2_e1 | * | 97.8266 | 97.4959 | 98.1596 | 89.9363 | 7787 | 200 | 7787 | 146 | 39 | 26.7123 | |
| gduggal-bwafb | SNP | * | map_l250_m2_e1 | het | 97.2238 | 97.1315 | 97.3163 | 90.3357 | 5113 | 151 | 5113 | 141 | 34 | 24.1135 | |
| gduggal-bwafb | SNP | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.7536 | 5 | 0 | 5 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | map_l250_m2_e1 | homalt | 98.9985 | 98.1972 | 99.8130 | 89.0383 | 2669 | 49 | 2669 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | SNP | * | map_siren | * | 99.2387 | 99.3893 | 99.0885 | 58.6242 | 145335 | 893 | 145339 | 1337 | 225 | 16.8287 | |
| gduggal-bwafb | SNP | * | map_siren | het | 98.9549 | 99.3230 | 98.5895 | 60.8677 | 90375 | 616 | 90379 | 1293 | 200 | 15.4679 | |
| gduggal-bwafb | SNP | * | map_siren | hetalt | 98.7500 | 97.5309 | 100.0000 | 72.9452 | 79 | 2 | 79 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | map_siren | homalt | 99.7102 | 99.5014 | 99.9199 | 54.2074 | 54881 | 275 | 54881 | 44 | 25 | 56.8182 | |
| gduggal-bwafb | SNP | * | segdup | * | 98.9280 | 99.4656 | 98.3963 | 91.8876 | 27917 | 150 | 27917 | 455 | 30 | 6.5934 | |
| gduggal-bwafb | SNP | * | segdup | het | 98.4151 | 99.3244 | 97.5223 | 92.8812 | 17200 | 117 | 17200 | 437 | 12 | 2.7460 | |
| gduggal-bwafb | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1579 | 7 | 0 | 7 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | segdup | homalt | 99.7625 | 99.6928 | 99.8322 | 89.4414 | 10710 | 33 | 10710 | 18 | 18 | 100.0000 | |
| gduggal-bwafb | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | * | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | * | tech_badpromoters | * | 98.4326 | 100.0000 | 96.9136 | 57.8125 | 157 | 0 | 157 | 5 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | * | tech_badpromoters | het | 96.8553 | 100.0000 | 93.9024 | 62.0370 | 77 | 0 | 77 | 5 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | SNP | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 52.3810 | 80 | 0 | 80 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | * | * | 99.8083 | 99.8659 | 99.7507 | 20.3177 | 2082722 | 2796 | 2082858 | 5206 | 495 | 9.5083 | |
| gduggal-bwafb | SNP | ti | * | het | 99.7363 | 99.8649 | 99.6080 | 22.2231 | 1280165 | 1732 | 1280284 | 5038 | 382 | 7.5824 | |
| gduggal-bwafb | SNP | ti | * | hetalt | 99.7425 | 99.8282 | 99.6569 | 53.0218 | 581 | 1 | 581 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | SNP | ti | * | homalt | 99.9234 | 99.8676 | 99.9793 | 17.0184 | 801976 | 1063 | 801993 | 166 | 111 | 66.8675 | |
| gduggal-bwafb | SNP | ti | HG002complexvar | * | 99.8223 | 99.7766 | 99.8681 | 18.4222 | 507301 | 1136 | 507384 | 670 | 291 | 43.4328 | |
| gduggal-bwafb | SNP | ti | HG002complexvar | het | 99.7807 | 99.7408 | 99.8207 | 18.4948 | 313950 | 816 | 314019 | 564 | 202 | 35.8156 | |