PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52051-52100 / 86044 show all | |||||||||||||||
| gduggal-bwafb | SNP | * | HG002compoundhet | het | 96.7961 | 98.6458 | 95.0145 | 51.0584 | 13986 | 192 | 14103 | 740 | 130 | 17.5676 | |
| gduggal-bwafb | SNP | * | HG002compoundhet | hetalt | 99.8259 | 99.7680 | 99.8839 | 24.0741 | 860 | 2 | 860 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | * | HG002compoundhet | homalt | 99.2787 | 99.5826 | 98.9767 | 38.6655 | 10737 | 45 | 10736 | 111 | 91 | 81.9820 | |
| gduggal-bwafb | SNP | * | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | * | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | * | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | * | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | * | func_cds | * | 99.6211 | 99.9504 | 99.2939 | 30.1552 | 18141 | 9 | 18141 | 129 | 2 | 1.5504 | |
| gduggal-bwafb | SNP | * | func_cds | het | 99.3985 | 99.9462 | 98.8568 | 33.7832 | 11155 | 6 | 11155 | 129 | 2 | 1.5504 | |
| gduggal-bwafb | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 10 | 0 | 10 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | func_cds | homalt | 99.9785 | 99.9570 | 100.0000 | 23.2732 | 6976 | 3 | 6976 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 95.3543 | 98.5726 | 92.3394 | 77.6916 | 4696 | 68 | 4701 | 390 | 34 | 8.7180 | |
| gduggal-bwafb | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.3470 | 98.2759 | 88.8889 | 80.5601 | 2964 | 52 | 2968 | 371 | 22 | 5.9299 | |
| gduggal-bwafb | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.0000 | 99.0847 | 98.9155 | 68.8533 | 1732 | 16 | 1733 | 19 | 12 | 63.1579 | |
| gduggal-bwafb | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.5852 | 99.2612 | 97.9184 | 64.7490 | 55220 | 411 | 55320 | 1176 | 260 | 22.1088 | |
| gduggal-bwafb | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.1407 | 99.3309 | 96.9788 | 67.1842 | 35182 | 237 | 35277 | 1099 | 205 | 18.6533 | |
| gduggal-bwafb | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 96.2963 | 100.0000 | 92.8571 | 85.5670 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.3797 | 99.1386 | 99.6220 | 59.2352 | 20025 | 174 | 20030 | 76 | 54 | 71.0526 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 95.3784 | 95.4685 | 95.2885 | 77.7755 | 43631 | 2071 | 43726 | 2162 | 267 | 12.3497 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.3271 | 95.6499 | 93.0405 | 79.9739 | 27463 | 1249 | 27553 | 2061 | 214 | 10.3833 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.8525 | 15 | 0 | 15 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.2224 | 95.1576 | 99.3788 | 72.1373 | 16153 | 822 | 16158 | 101 | 53 | 52.4752 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6955 | 99.6275 | 95.8371 | 67.9253 | 4279 | 16 | 4282 | 186 | 9 | 4.8387 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.5242 | 99.6649 | 93.5754 | 71.7749 | 2677 | 9 | 2680 | 184 | 9 | 4.8913 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.7199 | 99.5649 | 99.8753 | 57.4423 | 1602 | 7 | 1602 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.4666 | 99.6442 | 97.3165 | 63.6796 | 6162 | 22 | 6165 | 170 | 16 | 9.4118 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.8070 | 99.7711 | 95.9189 | 66.2738 | 3922 | 9 | 3925 | 167 | 16 | 9.5808 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.6440 | 99.4227 | 99.8662 | 57.6502 | 2239 | 13 | 2239 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.8486 | 99.6390 | 98.0706 | 65.3592 | 3864 | 14 | 3863 | 76 | 10 | 13.1579 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.4567 | 99.7995 | 97.1496 | 66.8736 | 2489 | 5 | 2488 | 73 | 10 | 13.6986 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.5652 | 99.3492 | 99.7821 | 62.0766 | 1374 | 9 | 1374 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 77.5772 | 91.4508 | 67.3585 | 91.9490 | 353 | 33 | 357 | 173 | 20 | 11.5607 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 72.7179 | 89.8551 | 61.0706 | 92.0580 | 248 | 28 | 251 | 160 | 12 | 7.5000 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.1548 | 95.4545 | 89.0756 | 91.5182 | 105 | 5 | 106 | 13 | 8 | 61.5385 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||