PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
52001-52050 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | I6_15 | map_l150_m1_e0 | homalt | 93.3333 | 100.0000 | 87.5000 | 90.2439 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l150_m2_e0 | * | 84.4444 | 76.0000 | 95.0000 | 92.6740 | 19 | 6 | 19 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l150_m2_e0 | het | 75.0000 | 60.0000 | 100.0000 | 93.6306 | 9 | 6 | 10 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.2353 | 3 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l150_m2_e0 | homalt | 93.3333 | 100.0000 | 87.5000 | 91.9192 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l150_m2_e1 | * | 85.7143 | 77.7778 | 95.4545 | 92.3345 | 21 | 6 | 21 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l150_m2_e1 | het | 76.9231 | 62.5000 | 100.0000 | 93.3333 | 10 | 6 | 11 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.2353 | 3 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l150_m2_e1 | homalt | 94.1176 | 100.0000 | 88.8889 | 91.4286 | 8 | 0 | 8 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.4127 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m1_e0 | * | 76.9231 | 71.4286 | 83.3333 | 95.6522 | 5 | 2 | 5 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l250_m1_e0 | het | 66.6667 | 50.0000 | 100.0000 | 97.5000 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m1_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 92.1569 | 3 | 0 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l250_m2_e0 | * | 80.0000 | 75.0000 | 85.7143 | 95.3947 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l250_m2_e0 | het | 75.0000 | 60.0000 | 100.0000 | 96.5909 | 3 | 2 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m2_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 92.8571 | 3 | 0 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l250_m2_e1 | * | 80.0000 | 75.0000 | 85.7143 | 95.6522 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_l250_m2_e1 | het | 75.0000 | 60.0000 | 100.0000 | 96.8421 | 3 | 2 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I6_15 | map_l250_m2_e1 | homalt | 85.7143 | 100.0000 | 75.0000 | 93.1034 | 3 | 0 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_siren | * | 89.4095 | 81.6393 | 98.8142 | 76.5306 | 249 | 56 | 250 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_siren | het | 85.3548 | 74.8252 | 99.3333 | 74.6193 | 107 | 36 | 149 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | map_siren | hetalt | 87.5000 | 77.7778 | 100.0000 | 84.0000 | 56 | 16 | 16 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | map_siren | homalt | 96.6164 | 95.5556 | 97.7011 | 77.5194 | 86 | 4 | 85 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | segdup | * | 94.3926 | 90.8571 | 98.2143 | 89.2994 | 159 | 16 | 165 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | segdup | het | 94.1316 | 90.3614 | 98.2301 | 88.6089 | 75 | 8 | 111 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | segdup | hetalt | 89.8876 | 88.8889 | 90.9091 | 91.2000 | 40 | 5 | 10 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | segdup | homalt | 96.7033 | 93.6170 | 100.0000 | 90.2870 | 44 | 3 | 44 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I6_15 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I6_15 | tech_badpromoters | * | 96.0000 | 92.3077 | 100.0000 | 47.8261 | 12 | 1 | 12 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | tech_badpromoters | het | 92.3077 | 85.7143 | 100.0000 | 41.6667 | 6 | 1 | 7 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 3 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | I6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 62.5000 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | SNP | * | * | * | 99.7820 | 99.8619 | 99.7021 | 21.9848 | 3050417 | 4217 | 3050656 | 9115 | 775 | 8.5025 | |
| gduggal-bwafb | SNP | * | * | het | 99.6957 | 99.8616 | 99.5303 | 23.9839 | 1871007 | 2594 | 1871215 | 8830 | 595 | 6.7384 | |
| gduggal-bwafb | SNP | * | * | hetalt | 99.5989 | 99.7704 | 99.4279 | 53.2620 | 869 | 2 | 869 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | SNP | * | * | homalt | 99.9194 | 99.8626 | 99.9762 | 18.5273 | 1178541 | 1621 | 1178572 | 280 | 175 | 62.5000 | |
| gduggal-bwafb | SNP | * | HG002complexvar | * | 99.8109 | 99.7664 | 99.8554 | 20.0831 | 752623 | 1762 | 752783 | 1090 | 464 | 42.5688 | |
| gduggal-bwafb | SNP | * | HG002complexvar | het | 99.7664 | 99.7319 | 99.8010 | 20.1804 | 464252 | 1248 | 464384 | 926 | 324 | 34.9892 | |
| gduggal-bwafb | SNP | * | HG002complexvar | hetalt | 99.3569 | 99.6774 | 99.0385 | 46.2069 | 309 | 1 | 309 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | SNP | * | HG002complexvar | homalt | 99.8832 | 99.8222 | 99.9441 | 19.8833 | 288062 | 513 | 288090 | 161 | 137 | 85.0932 | |
| gduggal-bwafb | SNP | * | HG002compoundhet | * | 97.9194 | 99.0744 | 96.7911 | 45.9764 | 25583 | 239 | 25699 | 852 | 222 | 26.0563 | |