PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5101-5150 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.6577 | 3 | 0 | 4 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 99.5690 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l250_m2_e0 | * | 62.5000 | 100.0000 | 45.4545 | 99.0081 | 5 | 0 | 5 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.7362 | 3 | 0 | 4 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 50.0000 | 100.0000 | 33.3333 | 99.3697 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l250_m2_e1 | * | 62.5000 | 100.0000 | 45.4545 | 99.0152 | 5 | 0 | 5 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 98.7461 | 3 | 0 | 4 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 50.0000 | 100.0000 | 33.3333 | 99.3737 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_siren | * | 50.9653 | 84.6154 | 36.4641 | 88.9936 | 121 | 22 | 132 | 230 | 13 | 5.6522 | |
| qzeng-custom | INDEL | D16_PLUS | map_siren | het | 51.9122 | 88.4615 | 36.7347 | 86.9217 | 69 | 9 | 108 | 186 | 12 | 6.4516 | |
| qzeng-custom | INDEL | D16_PLUS | map_siren | hetalt | 0.0000 | 74.1935 | 0.0000 | 0.0000 | 23 | 8 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_siren | homalt | 49.9283 | 85.2941 | 35.2941 | 93.4678 | 29 | 5 | 24 | 44 | 1 | 2.2727 | |
| qzeng-custom | INDEL | D16_PLUS | segdup | * | 76.3496 | 93.1034 | 64.7059 | 94.9525 | 54 | 4 | 55 | 30 | 6 | 20.0000 | |
| qzeng-custom | INDEL | D16_PLUS | segdup | het | 76.6355 | 100.0000 | 62.1212 | 94.9309 | 37 | 0 | 41 | 25 | 5 | 20.0000 | |
| qzeng-custom | INDEL | D16_PLUS | segdup | hetalt | 0.0000 | 55.5556 | 0.0000 | 0.0000 | 5 | 4 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | segdup | homalt | 84.8485 | 100.0000 | 73.6842 | 95.0262 | 12 | 0 | 14 | 5 | 1 | 20.0000 | |
| qzeng-custom | INDEL | D16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D16_PLUS | tech_badpromoters | * | 85.7143 | 75.0000 | 100.0000 | 40.0000 | 3 | 1 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | tech_badpromoters | het | 85.7143 | 75.0000 | 100.0000 | 0.0000 | 3 | 1 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D16_PLUS | tech_badpromoters | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | * | * | 98.2982 | 97.8575 | 98.7428 | 57.2067 | 143601 | 3144 | 144677 | 1842 | 1294 | 70.2497 | |
| qzeng-custom | INDEL | D1_5 | * | het | 98.6409 | 98.8844 | 98.3986 | 58.7330 | 86597 | 977 | 96103 | 1564 | 1050 | 67.1355 | |
| qzeng-custom | INDEL | D1_5 | * | hetalt | 89.9947 | 83.6798 | 97.3404 | 85.7251 | 8573 | 1672 | 183 | 5 | 5 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | * | homalt | 99.2131 | 98.9883 | 99.4390 | 53.3870 | 48431 | 495 | 48391 | 273 | 239 | 87.5458 | |
| qzeng-custom | INDEL | D1_5 | HG002complexvar | * | 98.5796 | 98.0926 | 99.0713 | 54.7462 | 32091 | 624 | 32325 | 303 | 168 | 55.4455 | |
| qzeng-custom | INDEL | D1_5 | HG002complexvar | het | 98.6823 | 98.3530 | 99.0138 | 55.4973 | 20423 | 342 | 21686 | 216 | 103 | 47.6852 | |
| qzeng-custom | INDEL | D1_5 | HG002complexvar | hetalt | 93.1197 | 88.3876 | 98.3871 | 70.2875 | 1195 | 157 | 183 | 3 | 3 | 100.0000 | |
| qzeng-custom | INDEL | D1_5 | HG002complexvar | homalt | 99.0114 | 98.8205 | 99.2030 | 52.6484 | 10473 | 125 | 10456 | 84 | 62 | 73.8095 | |
| qzeng-custom | INDEL | D1_5 | HG002compoundhet | * | 88.1713 | 85.4271 | 91.0977 | 64.3947 | 10452 | 1783 | 11502 | 1124 | 856 | 76.1566 | |
| qzeng-custom | INDEL | D1_5 | HG002compoundhet | het | 92.9212 | 93.9236 | 91.9400 | 64.3165 | 1623 | 105 | 11042 | 968 | 705 | 72.8306 | |
| qzeng-custom | INDEL | D1_5 | HG002compoundhet | hetalt | 91.1048 | 83.6629 | 100.0000 | 61.9355 | 8547 | 1669 | 177 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | HG002compoundhet | homalt | 77.4248 | 96.9072 | 64.4647 | 67.2143 | 282 | 9 | 283 | 156 | 151 | 96.7949 | |
| qzeng-custom | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9825 | 4 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9795 | 2 | 0 | 2 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | decoy | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D1_5 | func_cds | * | 99.0536 | 100.0000 | 98.1250 | 39.8496 | 159 | 0 | 157 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D1_5 | func_cds | het | 98.2249 | 100.0000 | 96.5116 | 50.0000 | 85 | 0 | 83 | 3 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D1_5 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 21.2766 | 74 | 0 | 74 | 0 | 0 | ||
| qzeng-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 82.9227 | 78.1124 | 88.3643 | 60.1791 | 3112 | 872 | 3182 | 419 | 327 | 78.0430 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 87.7736 | 89.0780 | 86.5068 | 60.4550 | 1256 | 154 | 2526 | 394 | 302 | 76.6497 | |
| qzeng-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 79.6963 | 66.2459 | 100.0000 | 93.7500 | 1207 | 615 | 1 | 0 | 0 | ||