PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50751-50800 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | ti | map_l125_m2_e0 | * | 75.8315 | 61.2995 | 99.3947 | 87.0105 | 18548 | 11710 | 18555 | 113 | 34 | 30.0885 | |
| gduggal-bwaplat | SNP | ti | map_l125_m2_e0 | het | 80.5577 | 67.8375 | 99.1492 | 88.7803 | 12805 | 6071 | 12819 | 110 | 31 | 28.1818 | |
| gduggal-bwaplat | SNP | ti | map_l125_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 91.3669 | 12 | 12 | 12 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l125_m2_e0 | homalt | 67.0606 | 50.4578 | 99.9476 | 79.7932 | 5731 | 5627 | 5724 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l125_m2_e1 | * | 76.0359 | 61.5656 | 99.3981 | 86.9873 | 18820 | 11749 | 18827 | 114 | 34 | 29.8246 | |
| gduggal-bwaplat | SNP | ti | map_l125_m2_e1 | het | 80.7395 | 68.0935 | 99.1541 | 88.7617 | 12997 | 6090 | 13011 | 111 | 31 | 27.9279 | |
| gduggal-bwaplat | SNP | ti | map_l125_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 91.3669 | 12 | 12 | 12 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l125_m2_e1 | homalt | 67.2881 | 50.7157 | 99.9483 | 79.7369 | 5811 | 5647 | 5804 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l150_m0_e0 | * | 58.2240 | 41.2034 | 99.2037 | 94.0967 | 3239 | 4622 | 3239 | 26 | 11 | 42.3077 | |
| gduggal-bwaplat | SNP | ti | map_l150_m0_e0 | het | 62.3303 | 45.4974 | 98.9334 | 94.9642 | 2319 | 2778 | 2319 | 25 | 10 | 40.0000 | |
| gduggal-bwaplat | SNP | ti | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.1818 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l150_m0_e0 | homalt | 49.9321 | 33.2850 | 99.8913 | 89.4326 | 919 | 1842 | 919 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l150_m1_e0 | * | 68.9590 | 52.8054 | 99.3512 | 89.9469 | 10409 | 9303 | 10413 | 68 | 24 | 35.2941 | |
| gduggal-bwaplat | SNP | ti | map_l150_m1_e0 | het | 74.1845 | 59.2724 | 99.1222 | 91.2737 | 7332 | 5038 | 7340 | 65 | 21 | 32.3077 | |
| gduggal-bwaplat | SNP | ti | map_l150_m1_e0 | hetalt | 63.6364 | 46.6667 | 100.0000 | 92.4731 | 7 | 8 | 7 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l150_m1_e0 | homalt | 59.0384 | 41.8998 | 99.9022 | 84.1026 | 3070 | 4257 | 3066 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l150_m2_e0 | * | 70.0796 | 54.1244 | 99.3737 | 90.4802 | 11102 | 9410 | 11106 | 70 | 25 | 35.7143 | |
| gduggal-bwaplat | SNP | ti | map_l150_m2_e0 | het | 75.1762 | 60.5388 | 99.1490 | 91.7226 | 7798 | 5083 | 7806 | 67 | 22 | 32.8358 | |
| gduggal-bwaplat | SNP | ti | map_l150_m2_e0 | hetalt | 63.6364 | 46.6667 | 100.0000 | 93.7500 | 7 | 8 | 7 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l150_m2_e0 | homalt | 60.4067 | 43.2904 | 99.9090 | 85.1344 | 3297 | 4319 | 3293 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l150_m2_e1 | * | 70.2141 | 54.2827 | 99.3818 | 90.4903 | 11249 | 9474 | 11253 | 70 | 25 | 35.7143 | |
| gduggal-bwaplat | SNP | ti | map_l150_m2_e1 | het | 75.2791 | 60.6685 | 99.1595 | 91.7406 | 7896 | 5119 | 7904 | 67 | 22 | 32.8358 | |
| gduggal-bwaplat | SNP | ti | map_l150_m2_e1 | hetalt | 63.6364 | 46.6667 | 100.0000 | 93.8053 | 7 | 8 | 7 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l150_m2_e1 | homalt | 60.6049 | 43.4941 | 99.9103 | 85.0982 | 3346 | 4347 | 3342 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l250_m0_e0 | * | 48.2606 | 31.8978 | 99.0930 | 98.5682 | 437 | 933 | 437 | 4 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | ti | map_l250_m0_e0 | het | 49.4382 | 32.9764 | 98.7179 | 98.7999 | 308 | 626 | 308 | 4 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | C6_15 | map_l100_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l100_m0_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l100_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l100_m1_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l100_m1_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l100_m1_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l100_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l100_m2_e1 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l100_m2_e1 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l100_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | C6_15 | map_l125_m0_e0 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||