PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50701-50750 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 91.9498 | 85.6224 | 99.2869 | 60.0604 | 9189 | 1543 | 9190 | 66 | 25 | 37.8788 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 91.5844 | 85.2017 | 99.0009 | 65.9710 | 5746 | 998 | 5747 | 58 | 17 | 29.3103 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 92.5642 | 86.3306 | 99.7681 | 43.5629 | 3442 | 545 | 3442 | 8 | 8 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 40.6561 | 26.7327 | 84.8485 | 99.0214 | 27 | 74 | 28 | 5 | 3 | 60.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 36.1446 | 22.7273 | 88.2353 | 99.4016 | 15 | 51 | 15 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 48.2226 | 34.2857 | 81.2500 | 96.9811 | 12 | 23 | 13 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 91.9813 | 85.4583 | 99.5823 | 47.6985 | 3338 | 568 | 3338 | 14 | 1 | 7.1429 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 91.2939 | 84.4229 | 99.3824 | 53.3363 | 2092 | 386 | 2092 | 13 | 1 | 7.6923 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 93.1937 | 87.3160 | 99.9198 | 34.2646 | 1246 | 181 | 1246 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 54.5455 | 37.5000 | 100.0000 | 99.2228 | 3 | 5 | 3 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 50.0000 | 33.3333 | 100.0000 | 99.3939 | 2 | 4 | 2 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 98.2143 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | map_l100_m0_e0 | * | 72.8908 | 57.5582 | 99.3581 | 86.0136 | 12531 | 9240 | 12537 | 81 | 26 | 32.0988 | |
| gduggal-bwaplat | SNP | ti | map_l100_m0_e0 | het | 76.9732 | 62.9193 | 99.1113 | 88.0688 | 8798 | 5185 | 8810 | 79 | 24 | 30.3797 | |
| gduggal-bwaplat | SNP | ti | map_l100_m0_e0 | hetalt | 52.6316 | 35.7143 | 100.0000 | 93.4211 | 5 | 9 | 5 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l100_m0_e0 | homalt | 64.8122 | 47.9547 | 99.9463 | 76.1862 | 3728 | 4046 | 3722 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l100_m1_e0 | * | 83.2803 | 71.6572 | 99.4040 | 79.8206 | 34346 | 13585 | 34357 | 206 | 64 | 31.0680 | |
| gduggal-bwaplat | SNP | ti | map_l100_m1_e0 | het | 86.8689 | 77.3061 | 99.1314 | 82.6916 | 23147 | 6795 | 23169 | 203 | 61 | 30.0493 | |
| gduggal-bwaplat | SNP | ti | map_l100_m1_e0 | hetalt | 71.1111 | 55.1724 | 100.0000 | 88.8889 | 16 | 13 | 16 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l100_m1_e0 | homalt | 76.7378 | 62.2661 | 99.9732 | 69.0460 | 11183 | 6777 | 11172 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l100_m2_e0 | * | 83.6206 | 72.1656 | 99.3982 | 81.0322 | 35333 | 13628 | 35344 | 214 | 67 | 31.3084 | |
| gduggal-bwaplat | SNP | ti | map_l100_m2_e0 | het | 87.1494 | 77.7546 | 99.1265 | 83.6970 | 23810 | 6812 | 23832 | 210 | 63 | 30.0000 | |
| gduggal-bwaplat | SNP | ti | map_l100_m2_e0 | hetalt | 72.3404 | 56.6667 | 100.0000 | 89.8204 | 17 | 13 | 17 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l100_m2_e0 | homalt | 77.1723 | 62.8434 | 99.9652 | 71.1284 | 11506 | 6803 | 11495 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l100_m2_e1 | * | 83.7577 | 72.3674 | 99.4034 | 80.9971 | 35811 | 13674 | 35822 | 215 | 67 | 31.1628 | |
| gduggal-bwaplat | SNP | ti | map_l100_m2_e1 | het | 87.2661 | 77.9360 | 99.1339 | 83.6711 | 24129 | 6831 | 24151 | 211 | 63 | 29.8578 | |
| gduggal-bwaplat | SNP | ti | map_l100_m2_e1 | hetalt | 73.4694 | 58.0645 | 100.0000 | 89.2857 | 18 | 13 | 18 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l100_m2_e1 | homalt | 77.3423 | 63.0691 | 99.9657 | 71.0565 | 11664 | 6830 | 11653 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l125_m0_e0 | * | 63.7993 | 47.0146 | 99.2230 | 91.1459 | 6000 | 6762 | 6002 | 47 | 16 | 34.0426 | |
| gduggal-bwaplat | SNP | ti | map_l125_m0_e0 | het | 68.0749 | 51.8819 | 98.9622 | 92.4159 | 4287 | 3976 | 4291 | 45 | 14 | 31.1111 | |
| gduggal-bwaplat | SNP | ti | map_l125_m0_e0 | hetalt | 22.2222 | 12.5000 | 100.0000 | 98.3871 | 1 | 7 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l125_m0_e0 | homalt | 55.1813 | 38.1207 | 99.8832 | 84.5557 | 1712 | 2779 | 1710 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l125_m1_e0 | * | 75.1104 | 60.3648 | 99.3885 | 86.1772 | 17708 | 11627 | 17715 | 109 | 33 | 30.2752 | |
| gduggal-bwaplat | SNP | ti | map_l125_m1_e0 | het | 79.9258 | 66.9495 | 99.1416 | 88.1040 | 12229 | 6037 | 12243 | 106 | 30 | 28.3019 | |
| gduggal-bwaplat | SNP | ti | map_l125_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 89.1892 | 12 | 12 | 12 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l125_m1_e0 | homalt | 66.2065 | 49.4975 | 99.9451 | 78.1716 | 5467 | 5578 | 5460 | 3 | 3 | 100.0000 | |