PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50601-50650 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1771 | 7 | 0 | 7 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | segdup | homalt | 98.8522 | 97.8032 | 99.9239 | 88.9336 | 10507 | 236 | 10502 | 8 | 8 | 100.0000 | |
| gduggal-bwaplat | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | tech_badpromoters | * | 92.8814 | 87.2611 | 99.2754 | 66.7470 | 137 | 20 | 137 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | * | tech_badpromoters | het | 93.1507 | 88.3117 | 98.5507 | 74.5387 | 68 | 9 | 68 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | SNP | * | tech_badpromoters | homalt | 92.6174 | 86.2500 | 100.0000 | 52.0833 | 69 | 11 | 69 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | * | * | 99.0047 | 98.3196 | 99.6994 | 24.2468 | 2050467 | 35044 | 2050804 | 6183 | 880 | 14.2326 | |
| gduggal-bwaplat | SNP | ti | * | het | 98.9567 | 98.3966 | 99.5232 | 28.0886 | 1261337 | 20554 | 1261923 | 6046 | 762 | 12.6034 | |
| gduggal-bwaplat | SNP | ti | * | hetalt | 95.4648 | 92.2680 | 98.8909 | 56.0163 | 537 | 45 | 535 | 6 | 6 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | * | homalt | 99.0843 | 98.2012 | 99.9834 | 17.0820 | 788593 | 14445 | 788346 | 131 | 112 | 85.4962 | |
| gduggal-bwaplat | SNP | ti | HG002complexvar | * | 97.9838 | 97.0464 | 98.9394 | 19.5056 | 493419 | 15017 | 493754 | 5293 | 700 | 13.2250 | |
| gduggal-bwaplat | SNP | ti | HG002complexvar | het | 97.7064 | 97.0801 | 98.3410 | 19.6959 | 305575 | 9191 | 306161 | 5165 | 589 | 11.4037 | |
| gduggal-bwaplat | SNP | ti | HG002complexvar | hetalt | 89.7041 | 82.1256 | 98.8235 | 43.1438 | 170 | 37 | 168 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | HG002complexvar | homalt | 98.4485 | 97.0077 | 99.9328 | 19.1570 | 187674 | 5789 | 187425 | 126 | 109 | 86.5079 | |
| gduggal-bwaplat | SNP | ti | HG002compoundhet | * | 89.0817 | 91.8641 | 86.4629 | 42.2720 | 16056 | 1422 | 16121 | 2524 | 263 | 10.4200 | |
| gduggal-bwaplat | SNP | ti | HG002compoundhet | het | 83.6361 | 90.0158 | 78.1008 | 46.8217 | 8556 | 949 | 8677 | 2433 | 181 | 7.4394 | |
| gduggal-bwaplat | SNP | ti | HG002compoundhet | hetalt | 95.9569 | 92.2280 | 100.0000 | 21.9941 | 534 | 45 | 532 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | HG002compoundhet | homalt | 96.4038 | 94.2115 | 98.7006 | 34.6979 | 6966 | 428 | 6912 | 91 | 82 | 90.1099 | |
| gduggal-bwaplat | SNP | ti | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | func_cds | * | 99.4984 | 99.2747 | 99.7231 | 31.1374 | 13687 | 100 | 13687 | 38 | 4 | 10.5263 | |
| gduggal-bwaplat | SNP | ti | func_cds | het | 99.4112 | 99.2709 | 99.5519 | 36.3268 | 8442 | 62 | 8442 | 38 | 4 | 10.5263 | |
| gduggal-bwaplat | SNP | ti | func_cds | hetalt | 93.3333 | 87.5000 | 100.0000 | 56.2500 | 7 | 1 | 7 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | func_cds | homalt | 99.6481 | 99.2986 | 100.0000 | 20.6003 | 5238 | 37 | 5238 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.2539 | 90.8867 | 97.8801 | 82.7110 | 2952 | 296 | 2955 | 64 | 9 | 14.0625 | |
| gduggal-bwaplat | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.3459 | 90.0692 | 96.8700 | 86.2669 | 1823 | 201 | 1826 | 59 | 4 | 6.7797 | |
| gduggal-bwaplat | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.7591 | 92.2386 | 99.5591 | 69.5815 | 1129 | 95 | 1129 | 5 | 5 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 92.4984 | 86.7234 | 99.0973 | 67.6373 | 24247 | 3712 | 24262 | 221 | 75 | 33.9367 | |
| gduggal-bwaplat | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 92.0320 | 86.1800 | 98.7365 | 71.8190 | 15384 | 2467 | 15395 | 197 | 56 | 28.4264 | |
| gduggal-bwaplat | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 80.0000 | 66.6667 | 100.0000 | 87.8788 | 4 | 2 | 4 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 93.3264 | 87.6955 | 99.7299 | 56.2023 | 8859 | 1243 | 8863 | 24 | 19 | 79.1667 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 92.4986 | 87.0629 | 98.6582 | 85.3332 | 27114 | 4029 | 27131 | 369 | 118 | 31.9783 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 92.0166 | 86.7307 | 97.9886 | 88.3681 | 16981 | 2598 | 17002 | 349 | 101 | 28.9398 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.6522 | 91.6667 | 100.0000 | 95.9854 | 11 | 1 | 11 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 93.3161 | 87.6212 | 99.8027 | 73.3610 | 10122 | 1430 | 10118 | 20 | 17 | 85.0000 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.7781 | 95.4039 | 98.1926 | 71.9618 | 2823 | 136 | 2825 | 52 | 3 | 5.7692 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.9405 | 94.8116 | 97.0966 | 77.0267 | 1736 | 95 | 1739 | 52 | 3 | 5.7692 | |
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.1490 | 96.3652 | 100.0000 | 55.8357 | 1087 | 41 | 1086 | 0 | 0 | ||