PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50101-50150 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | * | map_l100_m1_e0 | homalt | 75.5140 | 60.6673 | 99.9817 | 70.3269 | 16382 | 10621 | 16370 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_l100_m2_e0 | * | 82.8217 | 70.9791 | 99.4075 | 82.3292 | 52499 | 21465 | 52511 | 313 | 86 | 27.4760 | |
| gduggal-bwaplat | SNP | * | map_l100_m2_e0 | het | 86.5211 | 76.7517 | 99.1404 | 84.8771 | 35612 | 10787 | 35636 | 309 | 82 | 26.5372 | |
| gduggal-bwaplat | SNP | * | map_l100_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 91.3669 | 24 | 18 | 24 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l100_m2_e0 | homalt | 75.9766 | 61.2688 | 99.9763 | 72.3553 | 16863 | 10660 | 16851 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_l100_m2_e1 | * | 82.9577 | 71.1789 | 99.4078 | 82.2985 | 53197 | 21540 | 53209 | 317 | 87 | 27.4448 | |
| gduggal-bwaplat | SNP | * | map_l100_m2_e1 | het | 86.6430 | 76.9436 | 99.1406 | 84.8541 | 36085 | 10813 | 36109 | 313 | 83 | 26.5176 | |
| gduggal-bwaplat | SNP | * | map_l100_m2_e1 | hetalt | 73.5294 | 58.1395 | 100.0000 | 91.0394 | 25 | 18 | 25 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l100_m2_e1 | homalt | 76.1334 | 61.4729 | 99.9766 | 72.2874 | 17087 | 10709 | 17075 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_l125_m0_e0 | * | 63.0515 | 46.1852 | 99.3234 | 91.8350 | 8953 | 10432 | 8955 | 61 | 21 | 34.4262 | |
| gduggal-bwaplat | SNP | * | map_l125_m0_e0 | het | 67.0117 | 50.6238 | 99.0887 | 93.0436 | 6411 | 6253 | 6415 | 59 | 19 | 32.2034 | |
| gduggal-bwaplat | SNP | * | map_l125_m0_e0 | hetalt | 20.0000 | 11.1111 | 100.0000 | 98.9796 | 1 | 8 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l125_m0_e0 | homalt | 54.9108 | 37.8576 | 99.9213 | 85.2772 | 2541 | 4171 | 2539 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_l125_m1_e0 | * | 74.4387 | 59.4965 | 99.4030 | 86.9422 | 26968 | 18359 | 26975 | 162 | 46 | 28.3951 | |
| gduggal-bwaplat | SNP | * | map_l125_m1_e0 | het | 79.2823 | 66.0433 | 99.1598 | 88.7864 | 18751 | 9641 | 18765 | 159 | 43 | 27.0440 | |
| gduggal-bwaplat | SNP | * | map_l125_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 92.0635 | 15 | 15 | 15 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l125_m1_e0 | homalt | 65.3285 | 48.5182 | 99.9634 | 78.9108 | 8202 | 8703 | 8195 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_l125_m2_e0 | * | 75.1671 | 60.4306 | 99.4087 | 87.7400 | 28235 | 18488 | 28242 | 168 | 47 | 27.9762 | |
| gduggal-bwaplat | SNP | * | map_l125_m2_e0 | het | 79.9285 | 66.9418 | 99.1669 | 89.4354 | 19626 | 9692 | 19640 | 165 | 44 | 26.6667 | |
| gduggal-bwaplat | SNP | * | map_l125_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.3628 | 15 | 15 | 15 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l125_m2_e0 | homalt | 66.1790 | 49.4619 | 99.9651 | 80.4937 | 8594 | 8781 | 8587 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 71.4286 | 60.9756 | 86.2069 | 85.2041 | 25 | 16 | 25 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 33.3333 | 25.0000 | 50.0000 | 87.5000 | 1 | 3 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 66.6667 | 50.0000 | 100.0000 | 91.6667 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 66.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 62.8571 | 46.8085 | 95.6522 | 83.6879 | 22 | 25 | 22 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 57.1429 | 40.0000 | 100.0000 | 91.3043 | 6 | 9 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 66.6667 | 50.0000 | 100.0000 | 65.8537 | 14 | 14 | 14 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 57.1429 | 50.0000 | 66.6667 | 90.3226 | 2 | 2 | 2 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 51.1450 | 34.5361 | 98.5294 | 84.0936 | 134 | 254 | 134 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 40.0000 | 25.0000 | 100.0000 | 89.1473 | 42 | 126 | 42 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 59.7610 | 42.8571 | 98.6842 | 72.9537 | 75 | 100 | 75 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 53.9683 | 37.7778 | 94.4444 | 90.3743 | 17 | 28 | 17 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 55.5556 | 38.4615 | 100.0000 | 91.4530 | 10 | 16 | 10 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 50.0000 | 33.3333 | 100.0000 | 98.5294 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 56.2500 | 39.1304 | 100.0000 | 75.6757 | 9 | 14 | 9 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 57.6923 | 40.5405 | 100.0000 | 85.4369 | 15 | 22 | 15 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 31.5789 | 18.7500 | 100.0000 | 94.2308 | 3 | 13 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 70.0000 | 53.8462 | 100.0000 | 75.0000 | 7 | 6 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 76.9231 | 62.5000 | 100.0000 | 78.2609 | 5 | 3 | 5 | 0 | 0 | ||