PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
451-500 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | SNP | * | map_l125_m1_e0 | het | 99.0847 | 98.9539 | 99.2159 | 70.0178 | 28095 | 297 | 28089 | 222 | 128 | 57.6577 | |
| rpoplin-dv42 | SNP | * | map_l125_m1_e0 | * | 99.2363 | 99.0558 | 99.4176 | 68.8661 | 44899 | 428 | 44893 | 263 | 168 | 63.8783 | |
| rpoplin-dv42 | SNP | * | map_l125_m0_e0 | homalt | 99.0933 | 98.5101 | 99.6834 | 69.3810 | 6612 | 100 | 6612 | 21 | 20 | 95.2381 | |
| rpoplin-dv42 | SNP | * | map_l125_m0_e0 | hetalt | 85.7143 | 100.0000 | 75.0000 | 88.4615 | 9 | 0 | 9 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l125_m0_e0 | het | 98.6495 | 98.6418 | 98.6571 | 74.4583 | 12492 | 172 | 12489 | 170 | 97 | 57.0588 | |
| rpoplin-dv42 | SNP | * | map_l125_m0_e0 | * | 98.7955 | 98.5969 | 98.9950 | 72.9367 | 19113 | 272 | 19110 | 194 | 120 | 61.8557 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e1 | homalt | 99.6343 | 99.4783 | 99.7907 | 63.6404 | 27651 | 145 | 27652 | 58 | 54 | 93.1034 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e1 | hetalt | 96.6292 | 100.0000 | 93.4783 | 84.9673 | 43 | 0 | 43 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e1 | het | 99.2783 | 99.1577 | 99.3992 | 66.0072 | 46503 | 395 | 46491 | 281 | 142 | 50.5338 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e1 | * | 99.4091 | 99.2775 | 99.5411 | 65.1919 | 74197 | 540 | 74186 | 342 | 199 | 58.1871 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e0 | homalt | 99.6325 | 99.4768 | 99.7886 | 63.6376 | 27379 | 144 | 27380 | 58 | 54 | 93.1034 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e0 | hetalt | 96.5517 | 100.0000 | 93.3333 | 85.0993 | 42 | 0 | 42 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e0 | het | 99.2759 | 99.1530 | 99.3992 | 65.9847 | 46006 | 393 | 45994 | 278 | 141 | 50.7194 | |
| rpoplin-dv42 | SNP | * | map_l100_m2_e0 | * | 99.4070 | 99.2740 | 99.5404 | 65.1757 | 73427 | 537 | 73416 | 339 | 198 | 58.4071 | |
| rpoplin-dv42 | SNP | * | map_l100_m1_e0 | homalt | 99.6291 | 99.4667 | 99.7919 | 61.1512 | 26859 | 144 | 26860 | 56 | 52 | 92.8571 | |
| rpoplin-dv42 | SNP | * | map_l100_m1_e0 | hetalt | 96.4706 | 100.0000 | 93.1818 | 83.5821 | 41 | 0 | 41 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l100_m1_e0 | het | 99.2638 | 99.1402 | 99.3876 | 64.2170 | 44969 | 390 | 44957 | 277 | 141 | 50.9025 | |
| rpoplin-dv42 | SNP | * | map_l100_m1_e0 | * | 99.3983 | 99.2625 | 99.5346 | 63.1596 | 71869 | 534 | 71858 | 336 | 196 | 58.3333 | |
| rpoplin-dv42 | SNP | * | map_l100_m0_e0 | homalt | 99.3564 | 98.9759 | 99.7398 | 62.7443 | 11501 | 119 | 11501 | 30 | 27 | 90.0000 | |
| rpoplin-dv42 | SNP | * | map_l100_m0_e0 | hetalt | 91.4286 | 100.0000 | 84.2105 | 84.6774 | 16 | 0 | 16 | 3 | 3 | 100.0000 | |
| rpoplin-dv42 | SNP | * | map_l100_m0_e0 | het | 98.8725 | 98.8493 | 98.8958 | 68.4376 | 20961 | 244 | 20957 | 234 | 116 | 49.5726 | |
| rpoplin-dv42 | SNP | * | map_l100_m0_e0 | * | 99.0394 | 98.8947 | 99.1845 | 66.6640 | 32478 | 363 | 32474 | 267 | 146 | 54.6816 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.8254 | 2 | 0 | 2 | 0 | 0 | ||
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 83.3333 | 71.4286 | 100.0000 | 96.7742 | 5 | 2 | 5 | 0 | 0 | ||
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 87.5000 | 77.7778 | 100.0000 | 96.7890 | 7 | 2 | 7 | 0 | 0 | ||
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9452 | 99.9270 | 99.9635 | 32.1349 | 2736 | 2 | 2736 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.9241 | 99.9133 | 99.9349 | 33.6595 | 4612 | 4 | 4607 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.9252 | 99.9048 | 99.9456 | 33.1240 | 7348 | 7 | 7343 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.8235 | 100.0000 | 97.6744 | 92.4429 | 41 | 0 | 42 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.0297 | 94.1176 | 95.9596 | 92.6174 | 96 | 6 | 95 | 4 | 3 | 75.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.1404 | 95.8042 | 96.4789 | 92.5654 | 137 | 6 | 137 | 5 | 4 | 80.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8741 | 99.9407 | 99.8075 | 37.7626 | 6741 | 4 | 6741 | 13 | 5 | 38.4615 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 58.3333 | 5 | 0 | 5 | 0 | 0 | ||
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.8687 | 99.8426 | 99.8949 | 39.6597 | 11415 | 18 | 11408 | 12 | 3 | 25.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.8707 | 99.8790 | 99.8625 | 38.9762 | 18161 | 22 | 18154 | 25 | 8 | 32.0000 | |
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | SNP | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||