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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
44901-44950 / 86044 show all
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
59.4534
45.9538
84.1837
88.0196
159187165315
16.1290
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
18.1575
16.2675
20.5446
86.8404
16383916664234
5.2960
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
8.8851
13.8889
6.5319
87.2673
40248426016
0.9983
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
29.2460
17.8797
80.2817
70.2306
1135191142824
85.7143
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
19.0476
12.1951
43.4783
96.2480
107210134
30.7692
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
38.3331
34.4623
43.1834
76.0195
2381452824203184342
10.7412
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
16.5768
23.8066
12.7153
80.3047
3841229406278732
1.1482
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
53.5399
39.1005
84.8881
55.0336
181728301820324282
87.0370
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
40.1458
27.7350
72.6592
88.8238
1804691947328
38.3562
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
41.5500
37.4241
46.6984
73.3990
2220371222562575311
12.0777
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
18.3177
25.9009
14.1693
78.4001
345987365221126
1.1759
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
56.5351
42.3182
85.1372
53.5880
170523241707298259
86.9128
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
42.3952
29.7723
73.6000
86.9452
1704011846626
39.3939
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
40.0585
36.9961
43.6736
81.3091
3111529831794100363
8.8537
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
23.7492
32.3709
18.7542
83.9944
7961663840363938
1.0442
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
53.5363
39.1660
84.5632
59.4976
186929031868341287
84.1642
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
51.3343
37.8608
79.6954
89.2663
44673247112038
31.6667
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
41.7638
36.3625
49.0496
86.4561
58461023159876219484
7.7826
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
31.6043
34.3302
29.2795
88.3797
220442162292553684
1.5173
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
51.4209
36.9403
84.5736
68.1324
217837182182398329
82.6633
gduggal-snapplatINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
53.2289
38.9258
84.1491
87.7362
14642297151328571
24.9123
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
52.8485
46.3538
61.4597
79.2031
2657307527621732277
15.9931
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_diTR_11to50het
37.4436
44.5341
32.3009
86.3021
607756657137732
2.3239
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
61.5928
47.2536
88.4257
46.3421
179820071803236207
87.7119
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_diTR_11to50homalt
55.0640
44.6809
71.7340
85.7770
25231230211938
31.9328
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_diTR_51to200*
11.5108
7.7670
22.2222
93.9481
1619014494
8.1633
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_diTR_51to200het
3.7037
11.1111
2.2222
94.8276
3241440
0.0000
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
13.1980
7.2626
72.2222
76.0000
131661354
80.0000
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_diTR_51to200homalt
0.0000
100.0000
00000
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_diTR_gt200*
0.0000
100.0000
00000
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_diTR_gt200het
0.0000
100.0000
00000
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
100.0000
00000
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
75.1306
62.9044
93.2559
77.8634
1672986168712215
12.2951
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10het
73.0270
60.6987
91.6395
81.0025
834540844772
2.5974
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10hetalt
71.8309
57.2785
96.2963
83.2149
18113518275
71.4286
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
79.0248
67.8719
94.5637
68.1984
657311661388
21.0526
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
01000
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
01000
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
32.5229
33.1367
31.9314
80.3989
129226071321281699
3.5156
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50het
24.5228
33.9401
19.1964
80.6408
5781125602253412
0.4736
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
40.4600
27.3210
77.9449
70.7692
3098223118869
78.4091
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
48.7196
38.0282
67.7741
83.0040
40566040819418
9.2784
gduggal-snapplatINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200*
11.3424
10.7807
11.9658
93.0543
292402820615
7.2816