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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
42701-42750 / 86044 show all
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
87.5446
82.8245
92.8353
37.8851
3337692151611756
47.8632
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
83.8465
88.9667
79.2835
61.5799
5086350913356
42.1053
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
75.3753
83.0063
69.0293
65.5447
6980142956392530425
16.7984
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
70.1659
88.4506
58.1458
66.8417
217528427912009225
11.1996
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
83.6293
78.9187
88.9381
47.0175
376610061809225103
45.7778
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
82.6900
88.2003
77.8277
75.2503
1039139103929697
32.7703
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
77.3318
82.5652
72.7223
71.1326
1327428031203745151002
22.1927
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
74.4014
87.0872
64.9416
71.9724
559182966133570542
15.1821
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
79.7260
75.6106
84.3152
58.0080
445814382204410248
60.4878
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
85.7504
85.7485
85.7523
74.5958
32255363220535212
39.6262
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
79.8568
84.6127
75.6070
64.0420
485088233941095247
22.5571
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_diTR_11to50het
73.2002
89.9486
61.7099
71.3186
12261371357842135
16.0333
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
86.8622
82.8909
91.2332
40.8368
3154651156115079
52.6667
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_diTR_11to50homalt
82.7682
83.3333
82.2107
69.9221
4709447610333
32.0388
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_diTR_51to200*
22.9391
31.0680
18.1818
56.7921
64142482164
1.8519
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_diTR_51to200het
1.3346
25.9259
0.6849
58.5227
72011450
0.0000
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
42.8058
31.8436
65.2778
41.9355
5712247253
12.0000
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_diTR_51to200homalt
0.0000
0.0000
65.9259
000461
2.1739
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_diTR_gt200*
0.0000
100.0000
00000
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_diTR_gt200het
0.0000
0.0000
0.0000
00000
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
100.0000
00000
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
96.7243
96.3506
97.1009
69.6907
25619725797732
41.5584
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10het
96.9484
97.0888
96.8085
71.1597
13344013654515
33.3333
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10hetalt
92.6603
88.6076
97.1014
74.9319
2803626887
87.5000
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
97.6779
97.8306
97.5258
65.0198
947219462410
41.6667
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.9930
10100
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.9828
10100
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
79.2799
83.4829
75.4797
66.1968
325564431861035247
23.8647
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50het
75.9768
87.8450
66.9339
67.8314
14962071670825122
14.7879
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
79.8362
74.7126
85.7143
54.9550
84528660010084
84.0000
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
87.5160
85.8216
89.2788
67.7054
91415191611041
37.2727
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200*
36.9757
51.3011
28.9044
74.0000
13813112430517
5.5738
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200het
13.1073
56.8627
7.4074
75.4950
2922222752
0.7273
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
63.9370
50.2304
87.9310
40.5128
1091081021410
71.4286
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
0.0000
0.0000
93.4156
010165
31.2500
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_triTR_11to50*
86.8494
93.7143
80.9217
61.7014
9846687820745
21.7391
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_triTR_11to50het
83.9467
95.9574
74.6082
62.8854
4511947616226
16.0494
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
90.8187
92.0128
89.6552
50.4274
288251561814
77.7778
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
90.9276
91.7603
90.1099
64.2202
24522246275
18.5185
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_triTR_51to200*
47.5921
56.0000
41.3793
69.7917
141112171
5.8824
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_triTR_51to200het
15.3846
50.0000
9.0909
81.0345
111100
0.0000
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
67.7725
56.5217
84.6154
31.5789
13101121
50.0000
gduggal-snapfbINDELI1_5lowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
0.0000
73.6842
00050
0.0000