PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42301-42350 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 96.2548 | 97.7351 | 94.8187 | 76.1564 | 21403 | 496 | 21393 | 1169 | 1072 | 91.7023 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 86.7363 | 86.3984 | 87.0769 | 60.8804 | 27136 | 4272 | 28091 | 4169 | 1922 | 46.1022 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 87.6713 | 88.1806 | 87.1679 | 60.5788 | 12131 | 1626 | 17750 | 2613 | 591 | 22.6177 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 83.9960 | 76.5257 | 93.0825 | 45.8976 | 7110 | 2181 | 2449 | 182 | 112 | 61.5385 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 89.5657 | 94.4378 | 85.1716 | 64.2887 | 7895 | 465 | 7892 | 1374 | 1219 | 88.7191 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 84.4875 | 91.0761 | 78.7879 | 71.3873 | 694 | 68 | 702 | 189 | 31 | 16.4021 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 81.9563 | 92.6437 | 73.4797 | 72.5162 | 403 | 32 | 435 | 157 | 14 | 8.9172 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 64.9606 | 65.2174 | 64.7059 | 72.5806 | 45 | 24 | 22 | 12 | 5 | 41.6667 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 93.8785 | 95.3488 | 92.4528 | 68.3014 | 246 | 12 | 245 | 20 | 12 | 60.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.4104 | 10 | 0 | 10 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.2467 | 7 | 0 | 8 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.6678 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 85.4858 | 93.1258 | 79.0043 | 75.2743 | 1436 | 106 | 1460 | 388 | 46 | 11.8557 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 82.2695 | 94.2516 | 72.9904 | 73.0327 | 869 | 53 | 908 | 336 | 30 | 8.9286 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 66.7890 | 70.2703 | 63.6364 | 84.0116 | 52 | 22 | 35 | 20 | 5 | 25.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 94.2467 | 94.3223 | 94.1712 | 78.1883 | 515 | 31 | 517 | 32 | 11 | 34.3750 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 86.4339 | 93.3208 | 80.4936 | 78.1982 | 992 | 71 | 1011 | 245 | 30 | 12.2449 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 83.5587 | 94.3683 | 74.9709 | 75.2021 | 620 | 37 | 644 | 215 | 21 | 9.7674 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 67.1449 | 70.2703 | 64.2857 | 89.1892 | 26 | 11 | 18 | 10 | 2 | 20.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 94.1717 | 93.7669 | 94.5799 | 81.8940 | 346 | 23 | 349 | 20 | 7 | 35.0000 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 64.6167 | 62.4637 | 66.9234 | 55.7051 | 1506 | 905 | 1564 | 773 | 382 | 49.4179 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 65.5538 | 64.1026 | 67.0722 | 60.4154 | 475 | 266 | 882 | 433 | 97 | 22.4018 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 68.0898 | 55.0736 | 89.1626 | 33.2237 | 711 | 580 | 362 | 44 | 24 | 54.5455 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 64.3216 | 84.4327 | 51.9481 | 54.2348 | 320 | 59 | 320 | 296 | 261 | 88.1757 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 87.7988 | 86.5556 | 89.0781 | 44.8149 | 17827 | 2769 | 18620 | 2283 | 1417 | 62.0675 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 90.0230 | 88.4886 | 91.6115 | 43.8230 | 6534 | 850 | 11631 | 1065 | 307 | 28.8263 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 85.8383 | 78.3200 | 94.9533 | 28.7854 | 6340 | 1755 | 2032 | 108 | 63 | 58.3333 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 88.6118 | 96.7950 | 81.7043 | 50.5663 | 4953 | 164 | 4957 | 1110 | 1047 | 94.3243 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 90.6005 | 89.5230 | 91.7043 | 43.8461 | 16346 | 1913 | 17079 | 1545 | 1043 | 67.5081 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 92.5170 | 90.9118 | 94.1799 | 42.0147 | 6072 | 607 | 10761 | 665 | 217 | 32.6316 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 88.8708 | 82.4960 | 96.3134 | 28.0265 | 5632 | 1195 | 1672 | 64 | 39 | 60.9375 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 90.9278 | 97.6646 | 85.0604 | 50.5657 | 4642 | 111 | 4646 | 816 | 787 | 96.4461 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 87.5291 | 86.9258 | 88.1409 | 52.6080 | 19341 | 2909 | 20149 | 2711 | 1465 | 54.0391 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 89.3383 | 88.9709 | 89.7087 | 51.9572 | 7470 | 926 | 12596 | 1445 | 343 | 23.7370 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 85.4215 | 78.1353 | 94.2062 | 35.5484 | 6386 | 1787 | 2065 | 127 | 67 | 52.7559 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 89.1553 | 96.5499 | 82.8127 | 57.5437 | 5485 | 196 | 5488 | 1139 | 1055 | 92.6251 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 86.7363 | 86.3984 | 87.0769 | 60.8804 | 27136 | 4272 | 28091 | 4169 | 1922 | 46.1022 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 87.6713 | 88.1806 | 87.1679 | 60.5788 | 12131 | 1626 | 17750 | 2613 | 591 | 22.6177 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 83.9960 | 76.5257 | 93.0825 | 45.8976 | 7110 | 2181 | 2449 | 182 | 112 | 61.5385 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 89.5657 | 94.4378 | 85.1716 | 64.2887 | 7895 | 465 | 7892 | 1374 | 1219 | 88.7191 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 91.8860 | 90.8028 | 92.9954 | 40.2854 | 22283 | 2257 | 23114 | 1741 | 1173 | 67.3751 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 93.4534 | 92.3513 | 94.5822 | 43.0987 | 9611 | 796 | 14228 | 815 | 315 | 38.6503 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 88.5630 | 82.2103 | 95.9796 | 32.1478 | 5661 | 1225 | 1886 | 79 | 51 | 64.5570 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 92.8220 | 96.7435 | 89.2061 | 36.1513 | 7011 | 236 | 7000 | 847 | 807 | 95.2774 | |
| gduggal-snapfb | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 49.6345 | 46.9154 | 52.6882 | 51.2725 | 327 | 370 | 343 | 308 | 167 | 54.2208 | |