PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41601-41650 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 69.4193 | 63.9344 | 75.9336 | 65.0725 | 312 | 176 | 366 | 116 | 104 | 89.6552 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 68.4689 | 57.9334 | 83.6879 | 54.1463 | 1026 | 745 | 236 | 46 | 44 | 95.6522 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 47.6817 | 34.6405 | 76.4706 | 72.3577 | 53 | 100 | 52 | 16 | 16 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 22.8571 | 13.0435 | 92.3077 | 56.6667 | 12 | 80 | 12 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 100.0000 | 0 | 9 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 25.0000 | 14.4578 | 92.3077 | 18.7500 | 12 | 71 | 12 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 75.4062 | 69.0323 | 83.0769 | 78.2609 | 107 | 48 | 108 | 22 | 21 | 95.4545 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 80.8625 | 80.6452 | 81.0811 | 77.1605 | 50 | 12 | 60 | 14 | 13 | 92.8571 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 47.8632 | 36.3636 | 70.0000 | 84.6154 | 16 | 28 | 7 | 3 | 3 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 86.3158 | 83.6735 | 89.1304 | 77.9904 | 41 | 8 | 41 | 5 | 5 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 61.1050 | 49.8107 | 79.0230 | 48.0597 | 658 | 663 | 550 | 146 | 144 | 98.6301 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 63.0372 | 53.0172 | 77.7273 | 49.0151 | 246 | 218 | 342 | 98 | 96 | 97.9592 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 60.9231 | 51.0140 | 75.6098 | 42.2535 | 327 | 314 | 124 | 40 | 40 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 54.9992 | 39.3519 | 91.3043 | 52.3316 | 85 | 131 | 84 | 8 | 8 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 38.7893 | 24.1935 | 97.7778 | 41.5584 | 45 | 141 | 44 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 36.2460 | 22.8571 | 87.5000 | 74.1935 | 8 | 27 | 7 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 39.3617 | 24.5033 | 100.0000 | 15.9091 | 37 | 114 | 37 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 75.5534 | 70.8134 | 80.9735 | 44.8780 | 296 | 122 | 183 | 43 | 43 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 65.4311 | 59.8361 | 72.1805 | 46.5863 | 73 | 49 | 96 | 37 | 37 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 88.1415 | 83.9662 | 92.7536 | 39.4737 | 199 | 38 | 64 | 5 | 5 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 57.1133 | 40.6780 | 95.8333 | 48.9362 | 24 | 35 | 23 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 37.5000 | 23.0769 | 100.0000 | 71.4286 | 3 | 10 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 28.5714 | 16.6667 | 100.0000 | 0.0000 | 2 | 10 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | I6_15 | map_l100_m0_e0 | * | 77.4194 | 72.7273 | 82.7586 | 80.5369 | 24 | 9 | 24 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m0_e0 | het | 84.4371 | 88.2353 | 80.9524 | 75.0000 | 15 | 2 | 17 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m0_e0 | hetalt | 60.0000 | 75.0000 | 50.0000 | 80.0000 | 3 | 1 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 89.0909 | 6 | 6 | 6 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l100_m1_e0 | * | 81.3037 | 72.8070 | 92.0455 | 76.5957 | 83 | 31 | 81 | 7 | 6 | 85.7143 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m1_e0 | het | 85.0531 | 79.6610 | 91.2281 | 72.1951 | 47 | 12 | 52 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m1_e0 | hetalt | 66.1017 | 59.0909 | 75.0000 | 72.4138 | 13 | 9 | 6 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m1_e0 | homalt | 82.1429 | 69.6970 | 100.0000 | 83.8028 | 23 | 10 | 23 | 0 | 0 | ||
| gduggal-snapfb | INDEL | I6_15 | map_l100_m2_e0 | * | 81.0925 | 72.4138 | 92.1348 | 78.6058 | 84 | 32 | 82 | 7 | 6 | 85.7143 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m2_e0 | het | 84.5604 | 78.6885 | 91.3793 | 74.1071 | 48 | 13 | 53 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | I6_15 | map_l100_m2_e0 | hetalt | 66.1017 | 59.0909 | 75.0000 | 72.4138 | 13 | 9 | 6 | 2 | 2 | 100.0000 | |