PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41451-41500 / 86044 show all | |||||||||||||||
| gduggal-snapfb | SNP | ti | map_l250_m2_e1 | het | 94.1247 | 95.4229 | 92.8614 | 87.6593 | 3148 | 151 | 3148 | 242 | 125 | 51.6529 | |
| gduggal-snapfb | SNP | ti | map_l250_m2_e1 | hetalt | 90.9091 | 100.0000 | 83.3333 | 93.2584 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_l250_m2_e1 | homalt | 95.4425 | 91.5914 | 99.6317 | 92.4268 | 1623 | 149 | 1623 | 6 | 5 | 83.3333 | |
| gduggal-snapfb | SNP | ti | map_siren | * | 98.5881 | 98.6618 | 98.5145 | 58.3905 | 99012 | 1343 | 99014 | 1493 | 523 | 35.0301 | |
| gduggal-snapfb | SNP | ti | map_siren | het | 98.2591 | 98.8009 | 97.7232 | 58.6413 | 61634 | 748 | 61636 | 1436 | 494 | 34.4011 | |
| gduggal-snapfb | SNP | ti | map_siren | hetalt | 96.5517 | 98.2456 | 94.9153 | 82.4405 | 56 | 1 | 56 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | map_siren | homalt | 99.1394 | 98.4334 | 99.8555 | 57.8682 | 37322 | 594 | 37322 | 54 | 29 | 53.7037 | |
| gduggal-snapfb | SNP | ti | segdup | * | 99.1459 | 99.5137 | 98.7809 | 90.9477 | 19442 | 95 | 19446 | 240 | 23 | 9.5833 | |
| gduggal-snapfb | SNP | ti | segdup | het | 98.8224 | 99.3766 | 98.2744 | 91.5559 | 11955 | 75 | 11960 | 210 | 13 | 6.1905 | |
| gduggal-snapfb | SNP | ti | segdup | hetalt | 50.0000 | 100.0000 | 33.3333 | 97.3214 | 2 | 0 | 2 | 4 | 1 | 25.0000 | |
| gduggal-snapfb | SNP | ti | segdup | homalt | 99.6936 | 99.7335 | 99.6538 | 89.7294 | 7485 | 20 | 7484 | 26 | 9 | 34.6154 | |
| gduggal-snapfb | SNP | ti | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | ti | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | ti | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | ti | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | ti | tech_badpromoters | * | 95.5056 | 100.0000 | 91.3978 | 56.9444 | 85 | 0 | 85 | 8 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | tech_badpromoters | het | 92.6316 | 100.0000 | 86.2745 | 57.1429 | 44 | 0 | 44 | 7 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | ti | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 56.7010 | 41 | 0 | 41 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | * | * | 98.8423 | 99.7914 | 97.9112 | 28.0235 | 967675 | 2023 | 968036 | 20652 | 782 | 3.7866 | |
| gduggal-snapfb | SNP | tv | * | het | 98.4503 | 99.7960 | 97.1404 | 29.1063 | 590497 | 1207 | 590839 | 17393 | 571 | 3.2829 | |
| gduggal-snapfb | SNP | tv | * | hetalt | 79.7614 | 99.7704 | 66.4373 | 62.1965 | 869 | 2 | 869 | 439 | 29 | 6.6059 | |
| gduggal-snapfb | SNP | tv | * | homalt | 99.5195 | 99.7842 | 99.2562 | 25.9790 | 376309 | 814 | 376328 | 2820 | 182 | 6.4539 | |
| gduggal-snapfb | SNP | tv | HG002complexvar | * | 98.7938 | 99.5787 | 98.0211 | 25.3464 | 245118 | 1037 | 245440 | 4955 | 529 | 10.6761 | |
| gduggal-snapfb | SNP | tv | HG002complexvar | het | 98.4837 | 99.5363 | 97.4531 | 25.4817 | 150035 | 699 | 150338 | 3929 | 342 | 8.7045 | |
| gduggal-snapfb | SNP | tv | HG002complexvar | hetalt | 82.4000 | 99.6774 | 70.2273 | 54.9642 | 309 | 1 | 309 | 131 | 28 | 21.3740 | |
| gduggal-snapfb | SNP | tv | HG002complexvar | homalt | 99.3543 | 99.6457 | 99.0647 | 24.8993 | 94774 | 337 | 94793 | 895 | 159 | 17.7654 | |
| gduggal-snapfb | SNP | tv | HG002compoundhet | * | 79.6649 | 97.8931 | 67.1595 | 54.5136 | 8735 | 188 | 8812 | 4309 | 247 | 5.7322 | |
| gduggal-snapfb | SNP | tv | HG002compoundhet | het | 69.0686 | 96.5761 | 53.7572 | 56.2100 | 4513 | 160 | 4600 | 3957 | 124 | 3.1337 | |
| gduggal-snapfb | SNP | tv | HG002compoundhet | hetalt | 97.7828 | 99.7680 | 95.8751 | 27.4859 | 860 | 2 | 860 | 37 | 8 | 21.6216 | |
| gduggal-snapfb | SNP | tv | HG002compoundhet | homalt | 95.1607 | 99.2326 | 91.4099 | 54.5488 | 3362 | 26 | 3352 | 315 | 115 | 36.5079 | |
| gduggal-snapfb | SNP | tv | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | func_cds | * | 99.4084 | 99.9542 | 98.8685 | 34.6495 | 4369 | 2 | 4369 | 50 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | func_cds | het | 99.0857 | 99.9247 | 98.2605 | 37.4682 | 2655 | 2 | 2655 | 47 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.5217 | 10 | 0 | 10 | 0 | 0 | ||
| gduggal-snapfb | SNP | tv | func_cds | homalt | 99.9120 | 100.0000 | 99.8243 | 29.4045 | 1704 | 0 | 1704 | 3 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 51.9003 | 97.6253 | 35.3454 | 76.8757 | 1480 | 36 | 1499 | 2742 | 30 | 1.0941 | |
| gduggal-snapfb | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 44.2331 | 96.9758 | 28.6507 | 74.2013 | 962 | 30 | 981 | 2443 | 19 | 0.7777 | |
| gduggal-snapfb | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 79.3893 | 0 | 0 | 0 | 54 | 1 | 1.8519 | ||
| gduggal-snapfb | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 80.4973 | 98.8550 | 67.8899 | 84.1240 | 518 | 6 | 518 | 245 | 10 | 4.0816 | |
| gduggal-snapfb | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 89.1402 | 99.2630 | 80.8911 | 72.6164 | 27474 | 204 | 27579 | 6515 | 214 | 3.2847 | |
| gduggal-snapfb | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 85.6403 | 99.1633 | 75.3631 | 71.5296 | 17421 | 147 | 17540 | 5734 | 127 | 2.2149 | |
| gduggal-snapfb | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 14.6893 | 100.0000 | 7.9268 | 78.0161 | 13 | 0 | 13 | 151 | 3 | 1.9868 | |