PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40951-41000 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 90.8156 | 88.7866 | 92.9396 | 44.8670 | 5978 | 755 | 6279 | 477 | 242 | 50.7338 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 90.8048 | 89.3111 | 92.3494 | 45.1133 | 3267 | 391 | 4092 | 339 | 139 | 41.0029 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 85.4625 | 82.9902 | 88.0866 | 50.9735 | 766 | 157 | 244 | 33 | 29 | 87.8788 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 92.5726 | 90.3810 | 94.8730 | 43.3628 | 1945 | 207 | 1943 | 105 | 74 | 70.4762 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 56.1021 | 47.7477 | 68.0000 | 49.7487 | 106 | 116 | 136 | 64 | 26 | 40.6250 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 48.7099 | 38.0000 | 67.8261 | 54.3651 | 19 | 31 | 78 | 37 | 9 | 24.3243 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 60.2656 | 47.2000 | 83.3333 | 23.4043 | 59 | 66 | 30 | 6 | 5 | 83.3333 | |
| gduggal-snapfb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 58.3333 | 59.5745 | 57.1429 | 50.5051 | 28 | 19 | 28 | 21 | 12 | 57.1429 | |
| gduggal-snapfb | INDEL | * | map_l100_m0_e0 | * | 92.7347 | 91.6827 | 93.8111 | 85.2162 | 1433 | 130 | 1440 | 95 | 22 | 23.1579 | |
| gduggal-snapfb | INDEL | * | map_l100_m0_e0 | het | 92.0855 | 91.5769 | 92.5998 | 82.0643 | 935 | 86 | 951 | 76 | 13 | 17.1053 | |
| gduggal-snapfb | INDEL | * | map_l100_m0_e0 | hetalt | 60.7460 | 57.5758 | 64.2857 | 94.2857 | 19 | 14 | 9 | 5 | 2 | 40.0000 | |
| gduggal-snapfb | INDEL | * | map_l100_m0_e0 | homalt | 95.6116 | 94.1061 | 97.1660 | 88.8033 | 479 | 30 | 480 | 14 | 7 | 50.0000 | |
| gduggal-snapfb | INDEL | * | map_l100_m1_e0 | * | 93.4753 | 91.3274 | 95.7267 | 83.9230 | 3275 | 311 | 3293 | 147 | 38 | 25.8503 | |
| gduggal-snapfb | INDEL | * | map_l100_m1_e0 | het | 93.1246 | 91.6331 | 94.6655 | 81.5482 | 2048 | 187 | 2094 | 118 | 21 | 17.7966 | |
| gduggal-snapfb | INDEL | * | map_l100_m1_e0 | hetalt | 60.3494 | 49.1935 | 78.0488 | 93.0034 | 61 | 63 | 32 | 9 | 5 | 55.5556 | |
| gduggal-snapfb | INDEL | * | map_l100_m1_e0 | homalt | 96.6439 | 95.0285 | 98.3151 | 86.5465 | 1166 | 61 | 1167 | 20 | 12 | 60.0000 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e0 | * | 93.4957 | 91.3079 | 95.7910 | 84.8783 | 3372 | 321 | 3391 | 149 | 39 | 26.1745 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e0 | het | 93.1137 | 91.5475 | 94.7345 | 82.7714 | 2112 | 195 | 2159 | 120 | 22 | 18.3333 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e0 | hetalt | 60.8114 | 49.6000 | 78.5714 | 93.3439 | 62 | 63 | 33 | 9 | 5 | 55.5556 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e0 | homalt | 96.6525 | 95.0040 | 98.3593 | 87.2369 | 1198 | 63 | 1199 | 20 | 12 | 60.0000 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e1 | * | 93.3057 | 90.9478 | 95.7892 | 85.0002 | 3416 | 340 | 3435 | 151 | 40 | 26.4901 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e1 | het | 92.9455 | 91.2079 | 94.7505 | 82.9512 | 2137 | 206 | 2184 | 121 | 22 | 18.1818 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e1 | hetalt | 59.5248 | 47.7273 | 79.0698 | 93.2917 | 63 | 69 | 34 | 9 | 5 | 55.5556 | |
| gduggal-snapfb | INDEL | * | map_l100_m2_e1 | homalt | 96.5853 | 94.9258 | 98.3037 | 87.2974 | 1216 | 65 | 1217 | 21 | 13 | 61.9048 | |
| gduggal-snapfb | INDEL | * | map_l125_m0_e0 | * | 92.6762 | 91.7234 | 93.6490 | 88.7210 | 809 | 73 | 811 | 55 | 16 | 29.0909 | |
| gduggal-snapfb | INDEL | * | map_l125_m0_e0 | het | 91.8622 | 90.9710 | 92.7711 | 85.6224 | 534 | 53 | 539 | 42 | 9 | 21.4286 | |
| gduggal-snapfb | INDEL | * | map_l125_m0_e0 | hetalt | 64.0000 | 72.7273 | 57.1429 | 96.1111 | 8 | 3 | 4 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | INDEL | * | map_l125_m0_e0 | homalt | 95.1935 | 94.0141 | 96.4029 | 91.9583 | 267 | 17 | 268 | 10 | 6 | 60.0000 | |
| gduggal-snapfb | INDEL | * | map_l125_m1_e0 | * | 94.2593 | 93.3555 | 95.1807 | 86.4184 | 1967 | 140 | 1975 | 100 | 24 | 24.0000 | |
| gduggal-snapfb | INDEL | * | map_l125_m1_e0 | het | 93.2290 | 92.6592 | 93.8060 | 83.9790 | 1237 | 98 | 1257 | 83 | 14 | 16.8675 | |
| gduggal-snapfb | INDEL | * | map_l125_m1_e0 | hetalt | 76.4505 | 70.0000 | 84.2105 | 94.8925 | 28 | 12 | 16 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | INDEL | * | map_l125_m1_e0 | homalt | 96.9613 | 95.9016 | 98.0447 | 89.0553 | 702 | 30 | 702 | 14 | 9 | 64.2857 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e0 | * | 94.4209 | 93.4882 | 95.3725 | 87.3515 | 2053 | 143 | 2061 | 100 | 24 | 24.0000 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e0 | het | 93.4243 | 92.8109 | 94.0459 | 85.2736 | 1291 | 100 | 1311 | 83 | 14 | 16.8675 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e0 | hetalt | 76.1978 | 69.0476 | 85.0000 | 95.2719 | 29 | 13 | 17 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e0 | homalt | 97.0861 | 96.0682 | 98.1258 | 89.6192 | 733 | 30 | 733 | 14 | 9 | 64.2857 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e1 | * | 94.4490 | 93.5281 | 95.3881 | 87.4419 | 2081 | 144 | 2089 | 101 | 24 | 23.7624 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e1 | het | 93.4708 | 92.8977 | 94.0510 | 85.3951 | 1308 | 100 | 1328 | 84 | 14 | 16.6667 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e1 | hetalt | 75.2098 | 67.4419 | 85.0000 | 95.3271 | 29 | 14 | 17 | 3 | 1 | 33.3333 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e1 | homalt | 97.1279 | 96.1240 | 98.1530 | 89.6772 | 744 | 30 | 744 | 14 | 9 | 64.2857 | |
| gduggal-snapfb | INDEL | * | map_l150_m0_e0 | * | 91.9264 | 90.6615 | 93.2271 | 91.6942 | 466 | 48 | 468 | 34 | 11 | 32.3529 | |
| gduggal-snapfb | INDEL | * | map_l150_m0_e0 | het | 90.4453 | 89.4428 | 91.4706 | 88.9359 | 305 | 36 | 311 | 29 | 6 | 20.6897 | |
| gduggal-snapfb | INDEL | * | map_l150_m0_e0 | hetalt | 76.3636 | 77.7778 | 75.0000 | 96.9697 | 7 | 2 | 3 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m0_e0 | homalt | 95.6522 | 93.9024 | 97.4684 | 94.4347 | 154 | 10 | 154 | 4 | 4 | 100.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m1_e0 | * | 93.3899 | 92.3019 | 94.5038 | 89.1529 | 1235 | 103 | 1238 | 72 | 21 | 29.1667 | |
| gduggal-snapfb | INDEL | * | map_l150_m1_e0 | het | 92.2591 | 91.5789 | 92.9495 | 86.7487 | 783 | 72 | 791 | 60 | 12 | 20.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m1_e0 | hetalt | 76.5957 | 66.6667 | 90.0000 | 96.6102 | 14 | 7 | 9 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | * | map_l150_m1_e0 | homalt | 96.1581 | 94.8052 | 97.5501 | 91.6231 | 438 | 24 | 438 | 11 | 8 | 72.7273 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e0 | * | 93.6073 | 92.4716 | 94.7712 | 89.9313 | 1302 | 106 | 1305 | 72 | 21 | 29.1667 | |
| gduggal-snapfb | INDEL | * | map_l150_m2_e0 | het | 92.5169 | 91.7219 | 93.3259 | 87.8250 | 831 | 75 | 839 | 60 | 12 | 20.0000 | |