PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40851-40900 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 50.0000 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | * | decoy | * | 57.1429 | 40.0000 | 100.0000 | 99.9776 | 4 | 6 | 4 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | decoy | het | 50.0000 | 33.3333 | 100.0000 | 99.9769 | 2 | 4 | 3 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | * | decoy | homalt | 50.0000 | 33.3333 | 100.0000 | 99.9773 | 1 | 2 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | func_cds | * | 91.5789 | 87.8652 | 95.6204 | 38.2883 | 391 | 54 | 393 | 18 | 12 | 66.6667 | |
| gduggal-snapfb | INDEL | * | func_cds | het | 88.4234 | 85.0467 | 92.0792 | 43.5754 | 182 | 32 | 186 | 16 | 10 | 62.5000 | |
| gduggal-snapfb | INDEL | * | func_cds | hetalt | 42.8571 | 60.0000 | 33.3333 | 57.1429 | 3 | 2 | 1 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | * | func_cds | homalt | 95.3704 | 91.1504 | 100.0000 | 31.5615 | 206 | 20 | 206 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 54.4986 | 47.4734 | 63.9642 | 60.7084 | 4782 | 5291 | 5499 | 3098 | 1349 | 43.5442 | |
| gduggal-snapfb | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 56.0716 | 49.9257 | 63.9431 | 62.6651 | 2017 | 2023 | 3506 | 1977 | 448 | 22.6606 | |
| gduggal-snapfb | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 50.6602 | 37.5000 | 78.0516 | 49.9118 | 1434 | 2390 | 665 | 187 | 113 | 60.4278 | |
| gduggal-snapfb | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 59.4713 | 60.2535 | 58.7091 | 58.8203 | 1331 | 878 | 1328 | 934 | 788 | 84.3683 | |
| gduggal-snapfb | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 75.0000 | 60.0000 | 100.0000 | 99.6733 | 12 | 8 | 12 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 85.7143 | 75.0000 | 100.0000 | 99.5387 | 9 | 3 | 10 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 57.1429 | 40.0000 | 100.0000 | 99.8589 | 2 | 3 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 88.3624 | 85.5319 | 91.3867 | 71.3799 | 80784 | 13665 | 85516 | 8060 | 4292 | 53.2506 | |
| gduggal-snapfb | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 89.0223 | 86.9300 | 91.2178 | 68.3628 | 41962 | 6309 | 53834 | 5183 | 1886 | 36.3882 | |
| gduggal-snapfb | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 78.2170 | 70.8374 | 87.3129 | 79.9686 | 10921 | 4496 | 3792 | 551 | 400 | 72.5953 | |
| gduggal-snapfb | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 91.4953 | 90.7025 | 92.3021 | 74.5517 | 27901 | 2860 | 27890 | 2326 | 2006 | 86.2425 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 77.3261 | 72.6018 | 82.7081 | 62.1191 | 47446 | 17905 | 52604 | 10998 | 5193 | 47.2177 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 77.7734 | 73.4547 | 82.6317 | 60.7271 | 22389 | 8091 | 34940 | 7344 | 2239 | 30.4875 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 71.6758 | 63.5678 | 82.1546 | 59.3969 | 10619 | 6086 | 3241 | 704 | 487 | 69.1761 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 81.2103 | 79.4781 | 83.0196 | 65.6096 | 14438 | 3728 | 14423 | 2950 | 2467 | 83.6271 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 67.0995 | 63.6364 | 70.9612 | 72.1865 | 1372 | 784 | 1410 | 577 | 119 | 20.6239 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 65.6349 | 65.9236 | 65.3487 | 72.3679 | 828 | 428 | 909 | 482 | 71 | 14.7303 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 52.7839 | 52.6946 | 52.8736 | 74.7093 | 88 | 79 | 46 | 41 | 18 | 43.9024 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 73.3639 | 62.2101 | 89.3910 | 71.1778 | 456 | 277 | 455 | 54 | 30 | 55.5556 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 82.7586 | 70.5882 | 100.0000 | 99.6599 | 12 | 5 | 12 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 94.7368 | 90.0000 | 100.0000 | 99.5183 | 9 | 1 | 10 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 33.3333 | 100.0000 | 1 | 2 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 50.0000 | 100.0000 | 99.8539 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 70.1273 | 67.6890 | 72.7479 | 71.4311 | 3465 | 1654 | 3529 | 1322 | 311 | 23.5250 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 68.5238 | 70.7333 | 66.4482 | 68.8856 | 2122 | 878 | 2230 | 1126 | 242 | 21.4920 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 53.4225 | 56.2232 | 50.8876 | 80.9255 | 131 | 102 | 86 | 83 | 33 | 39.7590 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 75.4927 | 64.2630 | 91.4781 | 75.0188 | 1212 | 674 | 1213 | 113 | 36 | 31.8584 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 73.1048 | 71.1289 | 75.1936 | 73.0650 | 2577 | 1046 | 2622 | 865 | 237 | 27.3988 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 71.8249 | 74.6024 | 69.2468 | 69.8343 | 1595 | 543 | 1664 | 739 | 192 | 25.9811 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 53.8091 | 57.5758 | 50.5051 | 84.7692 | 76 | 56 | 50 | 49 | 21 | 42.8571 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 77.5741 | 66.9623 | 92.1827 | 77.2517 | 906 | 447 | 908 | 77 | 24 | 31.1688 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 52.1835 | 44.7148 | 62.6476 | 54.5878 | 2720 | 3363 | 3237 | 1930 | 985 | 51.0363 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 53.5889 | 45.7759 | 64.6178 | 56.5306 | 997 | 1181 | 2071 | 1134 | 332 | 29.2769 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 52.3244 | 38.4502 | 81.8636 | 44.8624 | 1047 | 1676 | 492 | 109 | 68 | 62.3853 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 53.0813 | 57.1912 | 49.5224 | 53.3105 | 676 | 506 | 674 | 687 | 585 | 85.1528 | |
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 3 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||