PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40551-40600 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | C1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C1_5 | tech_badpromoters | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C1_5 | tech_badpromoters | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C1_5 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C1_5 | tech_badpromoters | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C6_15 | * | * | 71.8894 | 85.7143 | 61.9048 | 96.2298 | 6 | 1 | 13 | 8 | 5 | 62.5000 | |
| gduggal-snapfb | INDEL | C6_15 | * | het | 75.0000 | 85.7143 | 66.6667 | 94.0945 | 6 | 1 | 10 | 5 | 3 | 60.0000 | |
| gduggal-snapfb | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 50.0000 | 98.0000 | 0 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 50.0000 | 98.0583 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | C6_15 | HG002complexvar | * | 70.5882 | 75.0000 | 66.6667 | 92.2280 | 3 | 1 | 10 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | C6_15 | HG002complexvar | het | 72.4138 | 75.0000 | 70.0000 | 83.0508 | 3 | 1 | 7 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | INDEL | C6_15 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 50.0000 | 96.1538 | 0 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | HG002complexvar | homalt | 0.0000 | 0.0000 | 100.0000 | 96.6667 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 20.0000 | 93.3333 | 0 | 0 | 1 | 4 | 3 | 75.0000 | |
| gduggal-snapfb | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 85.0000 | 0 | 0 | 0 | 3 | 2 | 66.6667 | ||
| gduggal-snapfb | INDEL | C6_15 | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 50.0000 | 96.1538 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | HG002compoundhet | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C6_15 | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C6_15 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C6_15 | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 70.5882 | 100.0000 | 54.5455 | 96.1938 | 1 | 0 | 6 | 5 | 4 | 80.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 95.3488 | 1 | 0 | 3 | 3 | 2 | 66.6667 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 97.0149 | 0 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.1538 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 0.0000 | 0.0000 | 40.0000 | 95.6710 | 0 | 0 | 4 | 6 | 4 | 66.6667 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 28.5714 | 93.0693 | 0 | 0 | 2 | 5 | 3 | 60.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 66.6667 | 97.4138 | 0 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-snapfb | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 100.0000 | 88.2353 | 0 | 0 | 2 | 0 | 0 | ||