PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40351-40400 / 86044 show all | |||||||||||||||
| gduggal-bwavard | SNP | ti | map_l100_m1_e0 | homalt | 98.5262 | 97.1882 | 99.9016 | 59.9578 | 17455 | 505 | 17256 | 17 | 13 | 76.4706 | |
| gduggal-bwavard | SNP | ti | map_l100_m2_e0 | * | 96.6693 | 97.1855 | 96.1585 | 74.8078 | 47583 | 1378 | 47134 | 1883 | 157 | 8.3378 | |
| gduggal-bwavard | SNP | ti | map_l100_m2_e0 | het | 95.6400 | 97.2699 | 94.0639 | 78.7568 | 29786 | 836 | 29537 | 1864 | 142 | 7.6180 | |
| gduggal-bwavard | SNP | ti | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | map_l100_m2_e0 | homalt | 98.5295 | 97.2036 | 99.8921 | 62.3227 | 17797 | 512 | 17597 | 19 | 15 | 78.9474 | |
| gduggal-bwavard | SNP | ti | map_l100_m2_e1 | * | 96.6812 | 97.1951 | 96.1726 | 74.8216 | 48097 | 1388 | 47642 | 1896 | 159 | 8.3861 | |
| gduggal-bwavard | SNP | ti | map_l100_m2_e1 | het | 95.6635 | 97.2933 | 94.0874 | 78.7700 | 30122 | 838 | 29869 | 1877 | 144 | 7.6718 | |
| gduggal-bwavard | SNP | ti | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 31 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | map_l100_m2_e1 | homalt | 98.5250 | 97.1937 | 99.8932 | 62.3163 | 17975 | 519 | 17773 | 19 | 15 | 78.9474 | |
| gduggal-bwavard | SNP | ti | map_l125_m0_e0 | * | 94.2056 | 97.3045 | 91.2979 | 82.1654 | 12418 | 344 | 12317 | 1174 | 66 | 5.6218 | |
| gduggal-bwavard | SNP | ti | map_l125_m0_e0 | het | 92.1685 | 97.6038 | 87.3066 | 84.9758 | 8065 | 198 | 8013 | 1165 | 59 | 5.0644 | |
| gduggal-bwavard | SNP | ti | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | map_l125_m0_e0 | homalt | 98.3384 | 96.9272 | 99.7913 | 70.3716 | 4353 | 138 | 4304 | 9 | 7 | 77.7778 | |
| gduggal-bwavard | SNP | ti | map_l125_m1_e0 | * | 95.9902 | 97.4706 | 94.5540 | 78.3647 | 28593 | 742 | 28335 | 1632 | 115 | 7.0466 | |
| gduggal-bwavard | SNP | ti | map_l125_m1_e0 | het | 94.5411 | 97.6568 | 91.6179 | 81.9499 | 17838 | 428 | 17707 | 1620 | 106 | 6.5432 | |
| gduggal-bwavard | SNP | ti | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 24 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | map_l125_m1_e0 | homalt | 98.6148 | 97.3744 | 99.8872 | 66.1535 | 10755 | 290 | 10628 | 12 | 9 | 75.0000 | |
| gduggal-bwavard | SNP | ti | map_l125_m2_e0 | * | 96.0478 | 97.4585 | 94.6773 | 79.7239 | 29489 | 769 | 29225 | 1643 | 116 | 7.0603 | |
| gduggal-bwavard | SNP | ti | map_l125_m2_e0 | het | 94.6336 | 97.6319 | 91.8139 | 83.0438 | 18429 | 447 | 18293 | 1631 | 107 | 6.5604 | |
| gduggal-bwavard | SNP | ti | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 24 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | map_l125_m2_e0 | homalt | 98.6173 | 97.3763 | 99.8904 | 68.4929 | 11060 | 298 | 10932 | 12 | 9 | 75.0000 | |
| gduggal-bwavard | SNP | ti | map_l125_m2_e1 | * | 96.0728 | 97.4778 | 94.7076 | 79.7669 | 29798 | 771 | 29527 | 1650 | 116 | 7.0303 | |
| gduggal-bwavard | SNP | ti | map_l125_m2_e1 | het | 94.6705 | 97.6529 | 91.8649 | 83.0811 | 18639 | 448 | 18497 | 1638 | 107 | 6.5324 | |
| gduggal-bwavard | SNP | ti | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 24 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | map_l125_m2_e1 | homalt | 98.6250 | 97.3905 | 99.8913 | 68.5234 | 11159 | 299 | 11030 | 12 | 9 | 75.0000 | |
| gduggal-bwavard | SNP | ti | map_l150_m0_e0 | * | 92.8160 | 97.0360 | 88.9477 | 85.9871 | 7628 | 233 | 7565 | 940 | 50 | 5.3192 | |
| gduggal-bwavard | SNP | ti | map_l150_m0_e0 | het | 90.2624 | 97.3906 | 84.1064 | 88.1487 | 4964 | 133 | 4932 | 932 | 44 | 4.7210 | |
| gduggal-bwavard | SNP | ti | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | map_l150_m0_e0 | homalt | 98.0657 | 96.4868 | 99.6971 | 76.4491 | 2664 | 97 | 2633 | 8 | 6 | 75.0000 | |
| gduggal-bwavard | SNP | ti | map_l150_m1_e0 | * | 95.2687 | 97.5497 | 93.0920 | 81.8831 | 19229 | 483 | 19055 | 1414 | 91 | 6.4356 | |
| gduggal-bwavard | SNP | ti | map_l150_m1_e0 | het | 93.4529 | 97.7284 | 89.5358 | 84.8427 | 12089 | 281 | 11996 | 1402 | 82 | 5.8488 | |
| gduggal-bwavard | SNP | ti | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | map_l150_m1_e0 | homalt | 98.6247 | 97.4478 | 99.8303 | 71.2444 | 7140 | 187 | 7059 | 12 | 9 | 75.0000 | |
| gduggal-bwavard | SNP | ti | map_l150_m2_e0 | * | 95.3841 | 97.5624 | 93.3010 | 83.0334 | 20012 | 500 | 19833 | 1424 | 93 | 6.5309 | |
| gduggal-bwavard | SNP | ti | map_l150_m2_e0 | het | 93.6309 | 97.7486 | 89.8461 | 85.7790 | 12591 | 290 | 12494 | 1412 | 84 | 5.9490 | |
| gduggal-bwavard | SNP | ti | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | map_l150_m2_e0 | homalt | 98.6236 | 97.4396 | 99.8368 | 73.2710 | 7421 | 195 | 7339 | 12 | 9 | 75.0000 | |
| gduggal-bwavard | SNP | ti | map_l150_m2_e1 | * | 95.4042 | 97.5776 | 93.3256 | 83.0965 | 20221 | 502 | 20037 | 1433 | 94 | 6.5597 | |
| gduggal-bwavard | SNP | ti | map_l150_m2_e1 | het | 93.6574 | 97.7641 | 89.8818 | 85.8419 | 12724 | 291 | 12623 | 1421 | 85 | 5.9817 | |
| gduggal-bwavard | SNP | ti | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 15 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | map_l150_m2_e1 | homalt | 98.6309 | 97.4522 | 99.8384 | 73.3079 | 7497 | 196 | 7414 | 12 | 9 | 75.0000 | |
| gduggal-bwavard | SNP | ti | map_l250_m0_e0 | * | 86.4567 | 95.9854 | 78.6490 | 94.9013 | 1315 | 55 | 1304 | 354 | 10 | 2.8249 | |
| gduggal-bwavard | SNP | ti | map_l250_m0_e0 | het | 82.1372 | 96.0385 | 71.7514 | 95.4014 | 897 | 37 | 889 | 350 | 7 | 2.0000 | |
| gduggal-bwavard | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | map_l250_m0_e0 | homalt | 97.4326 | 95.8716 | 99.0453 | 92.4843 | 418 | 18 | 415 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | SNP | ti | map_l250_m1_e0 | * | 90.9201 | 97.4012 | 85.2478 | 91.8224 | 4460 | 119 | 4438 | 768 | 26 | 3.3854 | |
| gduggal-bwavard | SNP | ti | map_l250_m1_e0 | het | 87.4417 | 97.6415 | 79.1712 | 92.9128 | 2898 | 70 | 2885 | 759 | 20 | 2.6351 | |
| gduggal-bwavard | SNP | ti | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | map_l250_m1_e0 | homalt | 98.2992 | 97.1998 | 99.4238 | 87.2438 | 1562 | 45 | 1553 | 9 | 6 | 66.6667 | |
| gduggal-bwavard | SNP | ti | map_l250_m2_e0 | * | 91.4486 | 97.4840 | 86.1170 | 92.1941 | 4882 | 126 | 4857 | 783 | 27 | 3.4483 | |