PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40201-40250 / 86044 show all | |||||||||||||||
| gduggal-bwavard | SNP | * | map_l250_m2_e0 | het | 87.1650 | 97.8052 | 78.6127 | 93.0154 | 5080 | 114 | 5032 | 1369 | 34 | 2.4836 | |
| gduggal-bwavard | SNP | * | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | map_l250_m2_e0 | homalt | 98.2454 | 97.0961 | 99.4222 | 88.0153 | 2608 | 78 | 2581 | 15 | 10 | 66.6667 | |
| gduggal-bwavard | SNP | * | map_l250_m2_e1 | * | 90.6461 | 97.4959 | 84.6957 | 92.1274 | 7787 | 200 | 7709 | 1393 | 45 | 3.2304 | |
| gduggal-bwavard | SNP | * | map_l250_m2_e1 | het | 87.2283 | 97.7964 | 78.7214 | 93.0803 | 5148 | 116 | 5098 | 1378 | 35 | 2.5399 | |
| gduggal-bwavard | SNP | * | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | map_l250_m2_e1 | homalt | 98.2472 | 97.0935 | 99.4288 | 88.0788 | 2639 | 79 | 2611 | 15 | 10 | 66.6667 | |
| gduggal-bwavard | SNP | * | map_siren | * | 97.0294 | 96.9773 | 97.0815 | 65.0881 | 141808 | 4420 | 139841 | 4204 | 408 | 9.7050 | |
| gduggal-bwavard | SNP | * | map_siren | het | 96.2598 | 97.0810 | 95.4524 | 69.7950 | 88335 | 2656 | 87233 | 4156 | 368 | 8.8547 | |
| gduggal-bwavard | SNP | * | map_siren | hetalt | 0.0000 | 1.2346 | 0.0000 | 0.0000 | 1 | 80 | 0 | 0 | 0 | ||
| gduggal-bwavard | SNP | * | map_siren | homalt | 98.4056 | 96.9468 | 99.9088 | 52.1457 | 53472 | 1684 | 52608 | 48 | 40 | 83.3333 | |
| gduggal-bwavard | SNP | * | segdup | * | 98.3638 | 97.5737 | 99.1668 | 93.3246 | 27386 | 681 | 27135 | 228 | 70 | 30.7018 | |
| gduggal-bwavard | SNP | * | segdup | het | 98.1974 | 97.4649 | 98.9410 | 94.6418 | 16878 | 439 | 16724 | 179 | 23 | 12.8492 | |
| gduggal-bwavard | SNP | * | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 7 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | segdup | homalt | 98.6646 | 97.8125 | 99.5315 | 88.9251 | 10508 | 235 | 10411 | 49 | 47 | 95.9184 | |
| gduggal-bwavard | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | SNP | * | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | SNP | * | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | SNP | * | tech_badpromoters | * | 93.2795 | 88.5350 | 98.5612 | 47.3485 | 139 | 18 | 137 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | SNP | * | tech_badpromoters | het | 93.2432 | 89.6104 | 97.1831 | 51.0345 | 69 | 8 | 69 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | SNP | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | * | tech_badpromoters | homalt | 93.3333 | 87.5000 | 100.0000 | 42.8571 | 70 | 10 | 68 | 0 | 0 | ||
| gduggal-bwavard | SNP | ti | * | * | 99.3434 | 99.0343 | 99.6545 | 21.4644 | 2065379 | 20139 | 2057255 | 7133 | 2188 | 30.6743 | |
| gduggal-bwavard | SNP | ti | * | het | 99.2556 | 99.0550 | 99.4571 | 24.6552 | 1269783 | 12114 | 1265789 | 6910 | 2002 | 28.9725 | |
| gduggal-bwavard | SNP | ti | * | hetalt | 0.0000 | 1.0309 | 0.0000 | 0.0000 | 6 | 576 | 0 | 0 | 0 | ||
| gduggal-bwavard | SNP | ti | * | homalt | 99.5201 | 99.0724 | 99.9718 | 15.7269 | 795590 | 7449 | 791466 | 223 | 186 | 83.4081 | |
| gduggal-bwavard | SNP | ti | HG002complexvar | * | 98.2991 | 97.1039 | 99.5241 | 18.2603 | 493712 | 14725 | 485576 | 2322 | 1599 | 68.8630 | |
| gduggal-bwavard | SNP | ti | HG002complexvar | het | 98.2415 | 97.2329 | 99.2714 | 18.7202 | 306056 | 8710 | 302050 | 2217 | 1521 | 68.6062 | |
| gduggal-bwavard | SNP | ti | HG002complexvar | hetalt | 0.0000 | 2.8986 | 0.0000 | 0.0000 | 6 | 201 | 0 | 0 | 0 | ||
| gduggal-bwavard | SNP | ti | HG002complexvar | homalt | 98.4467 | 96.9948 | 99.9428 | 17.4866 | 187650 | 5814 | 183526 | 105 | 78 | 74.2857 | |
| gduggal-bwavard | SNP | ti | HG002compoundhet | * | 84.8363 | 81.4967 | 88.4613 | 41.1291 | 14244 | 3234 | 14298 | 1865 | 1554 | 83.3244 | |
| gduggal-bwavard | SNP | ti | HG002compoundhet | het | 83.9896 | 84.9027 | 83.0960 | 44.5406 | 8070 | 1435 | 9104 | 1852 | 1542 | 83.2613 | |
| gduggal-bwavard | SNP | ti | HG002compoundhet | hetalt | 0.0000 | 1.0363 | 0.0000 | 0.0000 | 6 | 573 | 0 | 0 | 0 | ||
| gduggal-bwavard | SNP | ti | HG002compoundhet | homalt | 90.8566 | 83.4190 | 99.7503 | 32.3766 | 6168 | 1226 | 5194 | 13 | 12 | 92.3077 | |
| gduggal-bwavard | SNP | ti | decoy | * | 0.0000 | 0.0000 | 100.0000 | 99.9987 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | SNP | ti | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | SNP | ti | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | decoy | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9898 | 0 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | SNP | ti | func_cds | * | 99.3703 | 99.0716 | 99.6707 | 28.1478 | 13659 | 128 | 13622 | 45 | 15 | 33.3333 | |
| gduggal-bwavard | SNP | ti | func_cds | het | 99.2690 | 99.0710 | 99.4677 | 32.1944 | 8425 | 79 | 8409 | 45 | 15 | 33.3333 | |
| gduggal-bwavard | SNP | ti | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 8 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | func_cds | homalt | 99.6099 | 99.2227 | 100.0000 | 20.4486 | 5234 | 41 | 5213 | 0 | 0 | ||
| gduggal-bwavard | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 93.8459 | 95.8744 | 91.9015 | 78.3452 | 3114 | 134 | 3098 | 273 | 32 | 11.7216 | |
| gduggal-bwavard | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 91.8096 | 96.1957 | 87.8060 | 82.7170 | 1947 | 77 | 1937 | 269 | 29 | 10.7807 | |
| gduggal-bwavard | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 97.4522 | 95.3431 | 99.6567 | 58.4374 | 1167 | 57 | 1161 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | SNP | ti | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||