PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39901-39950 / 86044 show all | |||||||||||||||
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l100_m0_e0 | * | 93.8772 | 97.8167 | 90.2427 | 78.7360 | 10842 | 242 | 10821 | 1170 | 50 | 4.2735 | |
| gduggal-bwavard | SNP | tv | map_l100_m0_e0 | het | 91.6040 | 98.1446 | 85.8808 | 81.9878 | 7088 | 134 | 7074 | 1163 | 45 | 3.8693 | |
| gduggal-bwavard | SNP | tv | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 16 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l100_m0_e0 | homalt | 98.6984 | 97.6079 | 99.8135 | 64.7875 | 3754 | 92 | 3747 | 7 | 5 | 71.4286 | |
| gduggal-bwavard | SNP | tv | map_l100_m1_e0 | * | 95.8710 | 97.8083 | 94.0091 | 75.1618 | 23964 | 537 | 23883 | 1522 | 97 | 6.3732 | |
| gduggal-bwavard | SNP | tv | map_l100_m1_e0 | het | 94.3634 | 98.1060 | 90.8959 | 79.1108 | 15125 | 292 | 15076 | 1510 | 87 | 5.7616 | |
| gduggal-bwavard | SNP | tv | map_l100_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 41 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l100_m1_e0 | homalt | 98.7927 | 97.7441 | 99.8639 | 61.4588 | 8839 | 204 | 8807 | 12 | 10 | 83.3333 | |
| gduggal-bwavard | SNP | tv | map_l100_m2_e0 | * | 95.9136 | 97.8069 | 94.0922 | 76.6349 | 24484 | 549 | 24400 | 1532 | 99 | 6.4621 | |
| gduggal-bwavard | SNP | tv | map_l100_m2_e0 | het | 94.4449 | 98.1175 | 91.0373 | 80.3474 | 15480 | 297 | 15429 | 1519 | 88 | 5.7933 | |
| gduggal-bwavard | SNP | tv | map_l100_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 42 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l100_m2_e0 | homalt | 98.7765 | 97.7209 | 99.8553 | 63.6981 | 9004 | 210 | 8971 | 13 | 11 | 84.6154 | |
| gduggal-bwavard | SNP | tv | map_l100_m2_e1 | * | 95.9192 | 97.7930 | 94.1158 | 76.6728 | 24725 | 558 | 24632 | 1540 | 101 | 6.5584 | |
| gduggal-bwavard | SNP | tv | map_l100_m2_e1 | het | 94.4719 | 98.1303 | 91.0764 | 80.3818 | 15640 | 298 | 15585 | 1527 | 90 | 5.8939 | |
| gduggal-bwavard | SNP | tv | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 43 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l100_m2_e1 | homalt | 98.7497 | 97.6672 | 99.8565 | 63.7165 | 9085 | 217 | 9047 | 13 | 11 | 84.6154 | |
| gduggal-bwavard | SNP | tv | map_l125_m0_e0 | * | 92.0149 | 97.7077 | 86.9489 | 82.9272 | 6479 | 152 | 6469 | 971 | 34 | 3.5015 | |
| gduggal-bwavard | SNP | tv | map_l125_m0_e0 | het | 89.1615 | 98.1141 | 81.7062 | 85.2941 | 4318 | 83 | 4310 | 965 | 30 | 3.1088 | |
| gduggal-bwavard | SNP | tv | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l125_m0_e0 | homalt | 98.4958 | 97.2985 | 99.7229 | 71.9123 | 2161 | 60 | 2159 | 6 | 4 | 66.6667 | |
| gduggal-bwavard | SNP | tv | map_l125_m1_e0 | * | 94.9586 | 97.9708 | 92.1260 | 78.9367 | 15691 | 325 | 15643 | 1337 | 72 | 5.3852 | |
| gduggal-bwavard | SNP | tv | map_l125_m1_e0 | het | 93.0274 | 98.3804 | 88.2269 | 82.2633 | 9962 | 164 | 9937 | 1326 | 63 | 4.7511 | |
| gduggal-bwavard | SNP | tv | map_l125_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l125_m1_e0 | homalt | 98.7755 | 97.7645 | 99.8076 | 66.5926 | 5729 | 131 | 5706 | 11 | 9 | 81.8182 | |
| gduggal-bwavard | SNP | tv | map_l125_m2_e0 | * | 95.0420 | 97.9501 | 92.3015 | 80.3208 | 16151 | 338 | 16102 | 1343 | 73 | 5.4356 | |
| gduggal-bwavard | SNP | tv | map_l125_m2_e0 | het | 93.1678 | 98.3624 | 88.4944 | 83.4152 | 10271 | 171 | 10245 | 1332 | 64 | 4.8048 | |
| gduggal-bwavard | SNP | tv | map_l125_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l125_m2_e0 | homalt | 98.7568 | 97.7231 | 99.8125 | 68.8568 | 5880 | 137 | 5857 | 11 | 9 | 81.8182 | |
| gduggal-bwavard | SNP | tv | map_l125_m2_e1 | * | 95.0540 | 97.9288 | 92.3431 | 80.3827 | 16312 | 345 | 16257 | 1348 | 74 | 5.4896 | |
| gduggal-bwavard | SNP | tv | map_l125_m2_e1 | het | 93.2098 | 98.3701 | 88.5639 | 83.4663 | 10381 | 172 | 10354 | 1337 | 65 | 4.8616 | |
| gduggal-bwavard | SNP | tv | map_l125_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 30 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l125_m2_e1 | homalt | 98.7179 | 97.6457 | 99.8140 | 68.9260 | 5931 | 143 | 5903 | 11 | 9 | 81.8182 | |
| gduggal-bwavard | SNP | tv | map_l150_m0_e0 | * | 90.7711 | 97.7240 | 84.7419 | 86.2817 | 4079 | 95 | 4071 | 733 | 21 | 2.8649 | |
| gduggal-bwavard | SNP | tv | map_l150_m0_e0 | het | 87.7034 | 98.1358 | 79.2759 | 87.9471 | 2790 | 53 | 2781 | 727 | 17 | 2.3384 | |
| gduggal-bwavard | SNP | tv | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l150_m0_e0 | homalt | 98.2846 | 97.0633 | 99.5370 | 78.0859 | 1289 | 39 | 1290 | 6 | 4 | 66.6667 | |
| gduggal-bwavard | SNP | tv | map_l150_m1_e0 | * | 93.9183 | 97.9839 | 90.1767 | 82.0762 | 10692 | 220 | 10667 | 1162 | 50 | 4.3029 | |
| gduggal-bwavard | SNP | tv | map_l150_m1_e0 | het | 91.4999 | 98.3732 | 85.5243 | 84.8383 | 6833 | 113 | 6818 | 1154 | 44 | 3.8128 | |
| gduggal-bwavard | SNP | tv | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l150_m1_e0 | homalt | 98.7838 | 97.7952 | 99.7926 | 71.2507 | 3859 | 87 | 3849 | 8 | 6 | 75.0000 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e0 | * | 94.0699 | 97.9833 | 90.4572 | 83.2501 | 11126 | 229 | 11100 | 1171 | 50 | 4.2699 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e0 | het | 91.7382 | 98.3591 | 85.9524 | 85.7991 | 7133 | 119 | 7116 | 1163 | 44 | 3.7833 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l150_m2_e0 | homalt | 98.7875 | 97.7957 | 99.7996 | 73.3173 | 3993 | 90 | 3984 | 8 | 6 | 75.0000 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e1 | * | 94.1240 | 97.9830 | 90.5575 | 83.2923 | 11270 | 232 | 11240 | 1172 | 51 | 4.3515 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e1 | het | 91.8305 | 98.3805 | 86.0982 | 85.8449 | 7229 | 119 | 7209 | 1164 | 45 | 3.8660 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 20 | 0 | 0 | 0 | |||
| gduggal-bwavard | SNP | tv | map_l150_m2_e1 | homalt | 98.7655 | 97.7504 | 99.8019 | 73.3170 | 4041 | 93 | 4031 | 8 | 6 | 75.0000 | |
| gduggal-bwavard | SNP | tv | map_l250_m0_e0 | * | 83.6982 | 96.2092 | 74.0666 | 94.7166 | 736 | 29 | 734 | 257 | 5 | 1.9455 | |