PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39651-39700 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e0 | homalt | 97.4359 | 95.0000 | 100.0000 | 92.9124 | 57 | 3 | 55 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e1 | * | 83.9566 | 96.2162 | 74.4681 | 95.7604 | 178 | 7 | 175 | 60 | 4 | 6.6667 | |
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e1 | het | 79.4702 | 98.3607 | 66.6667 | 96.2081 | 120 | 2 | 120 | 60 | 4 | 6.6667 | |
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 1 | 2 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e1 | homalt | 97.4359 | 95.0000 | 100.0000 | 93.0905 | 57 | 3 | 55 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_siren | * | 93.7516 | 95.1544 | 92.3895 | 83.9860 | 3358 | 171 | 3302 | 272 | 95 | 34.9265 | |
| gduggal-bwavard | INDEL | D1_5 | map_siren | het | 93.7475 | 98.8142 | 89.1751 | 86.6713 | 2250 | 27 | 2216 | 269 | 92 | 34.2007 | |
| gduggal-bwavard | INDEL | D1_5 | map_siren | hetalt | 0.0000 | 1.1905 | 0.0000 | 0.0000 | 1 | 83 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_siren | homalt | 97.1880 | 94.7774 | 99.7245 | 70.3593 | 1107 | 61 | 1086 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | segdup | * | 92.2805 | 91.6591 | 92.9104 | 95.4235 | 1011 | 92 | 996 | 76 | 57 | 75.0000 | |
| gduggal-bwavard | INDEL | D1_5 | segdup | het | 93.9882 | 98.5549 | 89.8260 | 96.1006 | 682 | 10 | 671 | 76 | 57 | 75.0000 | |
| gduggal-bwavard | INDEL | D1_5 | segdup | hetalt | 0.0000 | 1.9231 | 0.0000 | 0.0000 | 1 | 51 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | segdup | homalt | 95.4876 | 91.3649 | 100.0000 | 92.3834 | 328 | 31 | 325 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9948 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9937 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | D1_5 | tech_badpromoters | * | 64.5598 | 68.4211 | 61.1111 | 50.0000 | 13 | 6 | 11 | 7 | 6 | 85.7143 | |
| gduggal-bwavard | INDEL | D1_5 | tech_badpromoters | het | 69.5652 | 100.0000 | 53.3333 | 51.6129 | 8 | 0 | 8 | 7 | 6 | 85.7143 | |
| gduggal-bwavard | INDEL | D1_5 | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | tech_badpromoters | homalt | 71.4286 | 55.5556 | 100.0000 | 40.0000 | 5 | 4 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | * | * | 62.6145 | 59.4780 | 66.1003 | 55.5649 | 15519 | 10573 | 15367 | 7881 | 7658 | 97.1704 | |
| gduggal-bwavard | INDEL | D6_15 | * | het | 73.6436 | 98.1194 | 58.9409 | 57.7838 | 11374 | 218 | 11286 | 7862 | 7644 | 97.2272 | |
| gduggal-bwavard | INDEL | D6_15 | * | hetalt | 0.0000 | 0.2691 | 0.0000 | 0.0000 | 22 | 8152 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | * | homalt | 78.7719 | 65.1755 | 99.5366 | 41.1089 | 4123 | 2203 | 4081 | 19 | 14 | 73.6842 | |
| gduggal-bwavard | INDEL | D6_15 | HG002complexvar | * | 76.1590 | 74.2173 | 78.2051 | 56.8522 | 3935 | 1367 | 3782 | 1054 | 954 | 90.5123 | |
| gduggal-bwavard | INDEL | D6_15 | HG002complexvar | het | 83.6960 | 96.5705 | 73.8504 | 58.8480 | 3013 | 107 | 2923 | 1035 | 940 | 90.8213 | |
| gduggal-bwavard | INDEL | D6_15 | HG002complexvar | hetalt | 0.0000 | 2.1718 | 0.0000 | 0.0000 | 22 | 991 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | HG002complexvar | homalt | 86.1695 | 76.9889 | 97.8360 | 44.7799 | 900 | 269 | 859 | 19 | 14 | 73.6842 | |
| gduggal-bwavard | INDEL | D6_15 | HG002compoundhet | * | 10.9462 | 9.3899 | 13.1210 | 37.7051 | 848 | 8183 | 832 | 5509 | 5456 | 99.0379 | |
| gduggal-bwavard | INDEL | D6_15 | HG002compoundhet | het | 22.7477 | 94.6262 | 12.9278 | 37.5915 | 810 | 46 | 816 | 5496 | 5446 | 99.0902 | |
| gduggal-bwavard | INDEL | D6_15 | HG002compoundhet | hetalt | 0.0000 | 0.2576 | 0.0000 | 0.0000 | 21 | 8130 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | HG002compoundhet | homalt | 62.0296 | 70.8333 | 55.1724 | 55.3846 | 17 | 7 | 16 | 13 | 10 | 76.9231 | |
| gduggal-bwavard | INDEL | D6_15 | decoy | * | 0.0000 | 0.0000 | 99.8955 | 0 | 1 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-bwavard | INDEL | D6_15 | decoy | het | 0.0000 | 0.0000 | 99.8893 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-bwavard | INDEL | D6_15 | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | D6_15 | func_cds | * | 89.1566 | 86.0465 | 92.5000 | 58.7629 | 37 | 6 | 37 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | func_cds | het | 93.3333 | 96.5517 | 90.3226 | 59.2105 | 28 | 1 | 28 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D6_15 | func_cds | homalt | 85.7143 | 75.0000 | 100.0000 | 57.1429 | 9 | 3 | 9 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 26.2279 | 23.2884 | 30.0166 | 55.4521 | 915 | 3014 | 905 | 2110 | 2058 | 97.5355 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 43.5112 | 89.2820 | 28.7648 | 54.7750 | 858 | 103 | 850 | 2105 | 2053 | 97.5297 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0423 | 0.0000 | 0.0000 | 1 | 2365 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 16.8906 | 9.3023 | 91.6667 | 74.3590 | 56 | 546 | 55 | 5 | 5 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 98.1651 | 3 | 3 | 3 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 97.9866 | 3 | 0 | 3 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 48.3943 | 45.1362 | 52.1594 | 60.4503 | 7243 | 8804 | 7210 | 6613 | 6501 | 98.3064 | |