PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39601-39650 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e0 | het | 92.5331 | 98.8057 | 87.0093 | 88.9275 | 1241 | 15 | 1219 | 182 | 48 | 26.3736 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 2.0833 | 0.0000 | 0.0000 | 1 | 47 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e0 | homalt | 97.2307 | 94.9264 | 99.6497 | 75.8051 | 580 | 31 | 569 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e1 | * | 92.7581 | 94.9974 | 90.6219 | 86.9648 | 1842 | 97 | 1807 | 187 | 51 | 27.2727 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e1 | het | 92.4908 | 98.8170 | 86.9258 | 89.0233 | 1253 | 15 | 1230 | 185 | 49 | 26.4865 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 1.9608 | 0.0000 | 0.0000 | 1 | 50 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e1 | homalt | 97.1870 | 94.8387 | 99.6546 | 75.9352 | 588 | 32 | 577 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m0_e0 | * | 90.7857 | 97.5806 | 84.8754 | 90.3137 | 484 | 12 | 477 | 85 | 9 | 10.5882 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m0_e0 | het | 88.6305 | 99.1304 | 80.1418 | 91.5077 | 342 | 3 | 339 | 84 | 8 | 9.5238 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 3 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | map_l125_m0_e0 | homalt | 97.5848 | 95.9459 | 99.2806 | 83.0694 | 142 | 6 | 138 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m1_e0 | * | 92.4713 | 96.7831 | 88.5274 | 88.5445 | 1053 | 35 | 1034 | 134 | 19 | 14.1791 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m1_e0 | het | 91.0091 | 98.8981 | 84.2857 | 90.2155 | 718 | 8 | 708 | 132 | 17 | 12.8788 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 0.0000 | 7.6923 | 0.0000 | 0.0000 | 1 | 12 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l125_m1_e0 | homalt | 97.5113 | 95.7020 | 99.3902 | 79.6400 | 334 | 15 | 326 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e0 | * | 92.6484 | 96.6754 | 88.9435 | 89.1467 | 1105 | 38 | 1086 | 135 | 19 | 14.0741 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e0 | het | 91.3057 | 98.8220 | 84.8519 | 90.7276 | 755 | 9 | 745 | 133 | 17 | 12.7820 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 0.0000 | 6.6667 | 0.0000 | 0.0000 | 1 | 14 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e0 | homalt | 97.6160 | 95.8791 | 99.4169 | 80.7412 | 349 | 15 | 341 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e1 | * | 92.6122 | 96.6292 | 88.9159 | 89.2090 | 1118 | 39 | 1099 | 137 | 20 | 14.5985 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e1 | het | 91.2581 | 98.8312 | 84.7630 | 90.8034 | 761 | 9 | 751 | 135 | 18 | 13.3333 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 0.0000 | 6.6667 | 0.0000 | 0.0000 | 1 | 14 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e1 | homalt | 97.5281 | 95.6989 | 99.4286 | 80.7692 | 356 | 16 | 348 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m0_e0 | * | 87.6716 | 96.8858 | 80.0578 | 92.5399 | 280 | 9 | 277 | 69 | 7 | 10.1449 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m0_e0 | het | 85.0446 | 99.0099 | 74.5318 | 93.3133 | 200 | 2 | 199 | 68 | 6 | 8.8235 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | map_l150_m0_e0 | homalt | 96.3707 | 94.1176 | 98.7342 | 87.7519 | 80 | 5 | 78 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m1_e0 | * | 91.1702 | 96.9317 | 86.0553 | 90.3175 | 695 | 22 | 685 | 111 | 13 | 11.7117 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m1_e0 | het | 89.0608 | 98.7552 | 81.0997 | 91.6235 | 476 | 6 | 472 | 110 | 12 | 10.9091 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m1_e0 | hetalt | 0.0000 | 14.2857 | 0.0000 | 0.0000 | 1 | 6 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l150_m1_e0 | homalt | 97.5340 | 95.6140 | 99.5327 | 83.1893 | 218 | 10 | 213 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e0 | * | 91.6113 | 96.9856 | 86.8014 | 90.8198 | 740 | 23 | 730 | 111 | 13 | 11.7117 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e0 | het | 89.5859 | 98.6381 | 82.0555 | 92.0606 | 507 | 7 | 503 | 110 | 12 | 10.9091 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e0 | hetalt | 0.0000 | 14.2857 | 0.0000 | 0.0000 | 1 | 6 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e0 | homalt | 97.6797 | 95.8678 | 99.5614 | 84.1667 | 232 | 10 | 227 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e1 | * | 91.5776 | 96.7866 | 86.9006 | 90.8380 | 753 | 25 | 743 | 112 | 14 | 12.5000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e1 | het | 89.6534 | 98.6590 | 82.1543 | 92.0895 | 515 | 7 | 511 | 111 | 13 | 11.7117 | |
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 0.0000 | 12.5000 | 0.0000 | 0.0000 | 1 | 7 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l150_m2_e1 | homalt | 97.5265 | 95.5645 | 99.5708 | 84.1389 | 237 | 11 | 232 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l250_m0_e0 | * | 73.9496 | 95.6522 | 60.2740 | 97.1350 | 44 | 2 | 44 | 29 | 2 | 6.8966 | |
| gduggal-bwavard | INDEL | D1_5 | map_l250_m0_e0 | het | 69.4737 | 100.0000 | 53.2258 | 97.1702 | 33 | 0 | 33 | 29 | 2 | 6.8966 | |
| gduggal-bwavard | INDEL | D1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | map_l250_m0_e0 | homalt | 91.6667 | 84.6154 | 100.0000 | 96.9188 | 11 | 2 | 11 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l250_m1_e0 | * | 83.0171 | 95.9064 | 73.1818 | 95.4081 | 164 | 7 | 161 | 59 | 4 | 6.7797 | |
| gduggal-bwavard | INDEL | D1_5 | map_l250_m1_e0 | het | 78.1362 | 98.1982 | 64.8810 | 95.9104 | 109 | 2 | 109 | 59 | 4 | 6.7797 | |
| gduggal-bwavard | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 1 | 2 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l250_m1_e0 | homalt | 97.2973 | 94.7368 | 100.0000 | 92.3865 | 54 | 3 | 52 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e0 | * | 83.8794 | 96.1957 | 74.3590 | 95.6707 | 177 | 7 | 174 | 60 | 4 | 6.6667 | |
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e0 | het | 79.3333 | 98.3471 | 66.4804 | 96.1331 | 119 | 2 | 119 | 60 | 4 | 6.6667 | |
| gduggal-bwavard | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 0.0000 | 33.3333 | 0.0000 | 0.0000 | 1 | 2 | 0 | 0 | 0 | ||