PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39551-39600 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | I1_5 | map_l100_m2_e1 | het | 94.4634 | 97.9012 | 91.2587 | 89.7122 | 793 | 17 | 783 | 75 | 36 | 48.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 45 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I1_5 | map_l100_m2_e1 | homalt | 97.2587 | 95.3704 | 99.2233 | 74.6305 | 515 | 25 | 511 | 4 | 2 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m0_e0 | * | 93.1788 | 95.1613 | 91.2773 | 90.7573 | 295 | 15 | 293 | 28 | 6 | 21.4286 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m0_e0 | het | 92.3077 | 96.8750 | 88.1517 | 92.7937 | 186 | 6 | 186 | 25 | 5 | 20.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.7242 | 97.5630 | 97.8859 | 54.6627 | 24741 | 618 | 24632 | 532 | 424 | 79.6992 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.1127 | 99.7563 | 96.5225 | 56.9760 | 14734 | 36 | 14683 | 529 | 422 | 79.7732 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 1.7032 | 0.0000 | 0.0000 | 7 | 404 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.1030 | 98.2511 | 99.9699 | 50.6031 | 10000 | 178 | 9949 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 82.6087 | 99.9777 | 0 | 1 | 19 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 0.0000 | 80.0000 | 99.9773 | 0 | 0 | 16 | 4 | 3 | 75.0000 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 100.0000 | 99.9800 | 0 | 0 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 78.2056 | 76.4379 | 80.0570 | 49.9353 | 9077 | 2798 | 8988 | 2239 | 1967 | 87.8517 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 84.9665 | 98.6599 | 74.6109 | 52.3621 | 6626 | 90 | 6568 | 2235 | 1963 | 87.8300 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.2679 | 0.0000 | 0.0000 | 4 | 1489 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 80.0060 | 66.7485 | 99.8350 | 38.5707 | 2447 | 1219 | 2420 | 4 | 4 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 28.5107 | 24.0260 | 35.0540 | 65.4357 | 296 | 936 | 292 | 541 | 480 | 88.7246 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 47.7941 | 75.5844 | 34.9456 | 64.9725 | 291 | 94 | 289 | 538 | 478 | 88.8476 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.3077 | 0.0000 | 0.0000 | 2 | 648 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 2.9557 | 1.5228 | 50.0000 | 87.7551 | 3 | 194 | 3 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 82.7813 | 80.4513 | 85.2502 | 40.8125 | 3280 | 797 | 3254 | 563 | 503 | 89.3428 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 88.1251 | 98.2495 | 79.8925 | 44.0994 | 2245 | 40 | 2229 | 561 | 501 | 89.3048 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 462 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 87.4518 | 77.8195 | 99.8053 | 29.5610 | 1035 | 295 | 1025 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 16.6415 | 14.6667 | 19.2308 | 69.7674 | 11 | 64 | 10 | 42 | 38 | 90.4762 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 31.3390 | 84.6154 | 19.2308 | 69.2308 | 11 | 2 | 10 | 42 | 38 | 90.4762 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 49 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 13 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | map_l100_m0_e0 | * | 91.4210 | 96.1761 | 87.1140 | 87.8478 | 830 | 33 | 818 | 121 | 18 | 14.8760 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m0_e0 | het | 89.9509 | 98.4772 | 82.7834 | 89.5125 | 582 | 9 | 577 | 120 | 17 | 14.1667 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 0.0000 | 7.1429 | 0.0000 | 0.0000 | 1 | 13 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l100_m0_e0 | homalt | 97.6237 | 95.7364 | 99.5868 | 77.6133 | 247 | 11 | 241 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m1_e0 | * | 92.6870 | 95.1299 | 90.3665 | 86.2223 | 1758 | 90 | 1726 | 184 | 50 | 27.1739 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m1_e0 | het | 92.3518 | 98.9247 | 86.5979 | 88.3812 | 1196 | 13 | 1176 | 182 | 48 | 26.3736 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 2.1277 | 0.0000 | 0.0000 | 1 | 46 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | map_l100_m1_e0 | homalt | 97.1395 | 94.7635 | 99.6377 | 74.6207 | 561 | 31 | 550 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e0 | * | 92.8526 | 95.1436 | 90.6694 | 86.8647 | 1822 | 93 | 1788 | 184 | 50 | 27.1739 | |