PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39001-39050 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 98.2456 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m0_e0 | * | 40.0000 | 100.0000 | 25.0000 | 96.8000 | 1 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m0_e0 | het | 40.0000 | 100.0000 | 25.0000 | 96.3964 | 1 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m1_e0 | * | 36.3636 | 50.0000 | 28.5714 | 97.0954 | 2 | 2 | 2 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m1_e0 | het | 44.4444 | 66.6667 | 33.3333 | 97.1292 | 2 | 1 | 2 | 4 | 1 | 25.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 96.8750 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m2_e0 | * | 46.1538 | 60.0000 | 37.5000 | 97.0803 | 3 | 2 | 3 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m2_e0 | het | 44.4444 | 66.6667 | 33.3333 | 97.4895 | 2 | 1 | 2 | 4 | 1 | 25.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 66.6667 | 100.0000 | 50.0000 | 94.2857 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m2_e1 | * | 46.1538 | 60.0000 | 37.5000 | 97.1119 | 3 | 2 | 3 | 5 | 2 | 40.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m2_e1 | het | 44.4444 | 66.6667 | 33.3333 | 97.5207 | 2 | 1 | 2 | 4 | 1 | 25.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 66.6667 | 100.0000 | 50.0000 | 94.2857 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_siren | * | 59.2100 | 61.5385 | 57.0513 | 92.6450 | 88 | 55 | 89 | 67 | 35 | 52.2388 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_siren | het | 65.0768 | 88.4615 | 51.4706 | 92.9130 | 69 | 9 | 70 | 66 | 34 | 51.5152 | |
| gduggal-bwavard | INDEL | D16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 31 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | map_siren | homalt | 70.3704 | 55.8824 | 95.0000 | 90.0990 | 19 | 15 | 19 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | segdup | * | 79.8443 | 81.0345 | 78.6885 | 95.9816 | 47 | 11 | 48 | 13 | 6 | 46.1538 | |
| gduggal-bwavard | INDEL | D16_PLUS | segdup | het | 84.0644 | 97.2973 | 74.0000 | 96.3530 | 36 | 1 | 37 | 13 | 6 | 46.1538 | |
| gduggal-bwavard | INDEL | D16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | segdup | homalt | 95.6522 | 91.6667 | 100.0000 | 92.5170 | 11 | 1 | 11 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | D16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | D16_PLUS | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | D16_PLUS | tech_badpromoters | * | 85.7143 | 75.0000 | 100.0000 | 50.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | tech_badpromoters | het | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | tech_badpromoters | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | D1_5 | * | * | 90.6910 | 89.3918 | 92.0286 | 58.1851 | 131178 | 15567 | 129649 | 11230 | 9891 | 88.0766 | |
| gduggal-bwavard | INDEL | D1_5 | * | het | 93.4417 | 99.0111 | 88.4655 | 62.3753 | 86708 | 866 | 85823 | 11190 | 9864 | 88.1501 | |
| gduggal-bwavard | INDEL | D1_5 | * | hetalt | 0.0000 | 0.3904 | 0.0000 | 0.0000 | 40 | 10205 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | * | homalt | 95.1427 | 90.8106 | 99.9088 | 44.5205 | 44430 | 4496 | 43826 | 40 | 27 | 67.5000 | |
| gduggal-bwavard | INDEL | D1_5 | HG002complexvar | * | 93.5349 | 92.9971 | 94.0789 | 54.5678 | 30424 | 2291 | 28886 | 1818 | 1258 | 69.1969 | |
| gduggal-bwavard | INDEL | D1_5 | HG002complexvar | het | 94.9162 | 98.4397 | 91.6362 | 58.2975 | 20441 | 324 | 19546 | 1784 | 1236 | 69.2825 | |
| gduggal-bwavard | INDEL | D1_5 | HG002complexvar | hetalt | 0.0000 | 2.8846 | 0.0000 | 0.0000 | 39 | 1313 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | HG002complexvar | homalt | 96.6460 | 93.8290 | 99.6373 | 42.9597 | 9944 | 654 | 9340 | 34 | 22 | 64.7059 | |
| gduggal-bwavard | INDEL | D1_5 | HG002compoundhet | * | 18.6118 | 15.4230 | 23.4630 | 68.0839 | 1887 | 10348 | 1786 | 5826 | 5576 | 95.7089 | |
| gduggal-bwavard | INDEL | D1_5 | HG002compoundhet | het | 34.5608 | 92.4769 | 21.2515 | 68.3690 | 1598 | 130 | 1569 | 5814 | 5564 | 95.7000 | |
| gduggal-bwavard | INDEL | D1_5 | HG002compoundhet | hetalt | 0.0000 | 0.3622 | 0.0000 | 0.0000 | 37 | 10179 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | HG002compoundhet | homalt | 90.4952 | 86.5979 | 94.7598 | 55.0098 | 252 | 39 | 217 | 12 | 12 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | decoy | * | 85.7143 | 75.0000 | 100.0000 | 99.9740 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9810 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9047 | 1 | 0 | 1 | 0 | 0 | ||