PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3851-3900 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 0.0000 | 99.2857 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| astatham-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | * | 50.0000 | 100.0000 | 33.3333 | 98.9510 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 98.5714 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 0.0000 | 99.3056 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| astatham-gatk | INDEL | I16_PLUS | map_siren | * | 94.2920 | 95.3488 | 93.2584 | 92.7642 | 82 | 4 | 83 | 6 | 1 | 16.6667 | |
| astatham-gatk | INDEL | I16_PLUS | map_siren | het | 93.0693 | 95.9184 | 90.3846 | 91.9255 | 47 | 2 | 47 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 87.2000 | 15 | 1 | 16 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | map_siren | homalt | 95.2381 | 95.2381 | 95.2381 | 95.4447 | 20 | 1 | 20 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I16_PLUS | segdup | * | 98.9474 | 100.0000 | 97.9167 | 95.9459 | 47 | 0 | 47 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | segdup | het | 100.0000 | 100.0000 | 100.0000 | 96.3470 | 24 | 0 | 24 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3510 | 4 | 0 | 4 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 94.6809 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | INDEL | I16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | INDEL | I16_PLUS | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | INDEL | I16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 73.3333 | 4 | 0 | 4 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I16_PLUS | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | INDEL | I16_PLUS | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | * | * | 99.4616 | 99.2520 | 99.6722 | 58.6147 | 149537 | 1127 | 149586 | 492 | 402 | 81.7073 | |
| astatham-gatk | INDEL | I1_5 | * | het | 99.5857 | 99.4610 | 99.7107 | 60.4880 | 78615 | 426 | 78596 | 228 | 141 | 61.8421 | |
| astatham-gatk | INDEL | I1_5 | * | hetalt | 97.1674 | 94.5243 | 99.9624 | 62.1019 | 10582 | 613 | 10645 | 4 | 4 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | * | homalt | 99.7125 | 99.8544 | 99.5710 | 55.1217 | 60340 | 88 | 60345 | 260 | 257 | 98.8462 | |
| astatham-gatk | INDEL | I1_5 | HG002complexvar | * | 99.6397 | 99.4275 | 99.8527 | 57.1222 | 33172 | 191 | 33219 | 49 | 39 | 79.5918 | |
| astatham-gatk | INDEL | I1_5 | HG002complexvar | het | 99.6251 | 99.3568 | 99.8949 | 58.0548 | 18072 | 117 | 18051 | 19 | 9 | 47.3684 | |
| astatham-gatk | INDEL | I1_5 | HG002complexvar | hetalt | 98.0296 | 96.3499 | 99.7688 | 70.6232 | 1663 | 63 | 1726 | 4 | 4 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | HG002complexvar | homalt | 99.8625 | 99.9182 | 99.8069 | 52.9404 | 13437 | 11 | 13442 | 26 | 26 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | HG002compoundhet | * | 96.1407 | 94.9417 | 97.3704 | 66.4075 | 11731 | 625 | 11738 | 317 | 315 | 99.3691 | |
| astatham-gatk | INDEL | I1_5 | HG002compoundhet | het | 94.9597 | 98.5882 | 91.5888 | 86.4942 | 838 | 12 | 784 | 72 | 70 | 97.2222 | |
| astatham-gatk | INDEL | I1_5 | HG002compoundhet | hetalt | 97.1718 | 94.5245 | 99.9718 | 56.8751 | 10565 | 612 | 10626 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | HG002compoundhet | homalt | 72.9700 | 99.6960 | 57.5439 | 88.3697 | 328 | 1 | 328 | 242 | 242 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | INDEL | I1_5 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | INDEL | I1_5 | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | INDEL | I1_5 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | INDEL | I1_5 | func_cds | * | 99.4505 | 100.0000 | 98.9071 | 34.4086 | 180 | 0 | 181 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | func_cds | het | 98.3607 | 100.0000 | 96.7742 | 40.9524 | 59 | 0 | 60 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 2 | 0 | 2 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 30.4094 | 119 | 0 | 119 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.6399 | 91.5309 | 97.9675 | 67.1249 | 1686 | 156 | 1687 | 35 | 30 | 85.7143 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.0444 | 96.2236 | 97.8793 | 78.6262 | 637 | 25 | 600 | 13 | 8 | 61.5385 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.3933 | 85.9532 | 99.8765 | 41.6427 | 771 | 126 | 809 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.5326 | 98.2332 | 92.9766 | 69.5519 | 278 | 5 | 278 | 21 | 21 | 100.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.8636 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| astatham-gatk | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.6667 | 1 | 0 | 1 | 0 | 0 | ||
| astatham-gatk | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||