PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38901-38950 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.5297 | 0.0000 | 0.0000 | 5 | 939 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 75.4333 | 60.8225 | 99.2832 | 50.1786 | 281 | 181 | 277 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 47.8303 | 45.4143 | 50.5177 | 68.7660 | 1847 | 2220 | 1854 | 1816 | 1681 | 92.5661 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 56.4307 | 91.8797 | 40.7201 | 70.5769 | 1222 | 108 | 1244 | 1811 | 1677 | 92.6008 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 0.3639 | 0.0000 | 0.0000 | 6 | 1643 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 72.3100 | 56.8934 | 99.1870 | 55.0110 | 619 | 469 | 610 | 5 | 4 | 80.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 50.3306 | 47.8296 | 53.1077 | 74.2686 | 2391 | 2608 | 2401 | 2120 | 1904 | 89.8113 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 60.0589 | 91.9736 | 44.5872 | 75.8345 | 1673 | 146 | 1701 | 2114 | 1899 | 89.8297 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 0.3107 | 0.0000 | 0.0000 | 6 | 1925 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 72.3907 | 57.0056 | 99.1501 | 60.4038 | 712 | 537 | 700 | 6 | 5 | 83.3333 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 48.6144 | 46.0379 | 51.4963 | 68.3816 | 825 | 967 | 826 | 778 | 725 | 93.1877 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 58.1718 | 92.1182 | 42.5074 | 70.5677 | 561 | 48 | 573 | 775 | 722 | 93.1613 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.6378 | 0.0000 | 0.0000 | 5 | 779 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 78.3577 | 64.9123 | 98.8281 | 48.0730 | 259 | 140 | 253 | 3 | 3 | 100.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 27.1461 | 25.0340 | 29.6474 | 55.0756 | 184 | 551 | 185 | 439 | 435 | 99.0888 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 37.1546 | 81.6568 | 24.0484 | 55.6068 | 138 | 31 | 139 | 439 | 435 | 99.0888 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 439 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 53.1792 | 36.2205 | 100.0000 | 47.1264 | 46 | 81 | 46 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 73.0417 | 73.5632 | 72.5275 | 81.8363 | 64 | 23 | 66 | 25 | 17 | 68.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 77.4194 | 92.3077 | 66.6667 | 82.1002 | 48 | 4 | 50 | 25 | 17 | 68.0000 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 12 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 82.0513 | 69.5652 | 100.0000 | 80.4878 | 16 | 7 | 16 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 75.1438 | 70.5882 | 80.3279 | 96.6630 | 48 | 20 | 49 | 12 | 11 | 91.6667 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 81.1166 | 86.3636 | 76.4706 | 96.8460 | 38 | 6 | 39 | 12 | 11 | 91.6667 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 80.0000 | 66.6667 | 100.0000 | 95.2607 | 10 | 5 | 10 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 55.2529 | 51.8248 | 59.1667 | 72.9556 | 497 | 462 | 497 | 343 | 309 | 90.0875 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 67.8403 | 94.5137 | 52.9086 | 74.2327 | 379 | 22 | 382 | 340 | 307 | 90.2941 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 0.3049 | 0.0000 | 0.0000 | 1 | 327 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 66.8472 | 50.8696 | 97.4576 | 61.1842 | 117 | 113 | 115 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 28.6792 | 24.6753 | 34.2342 | 68.3084 | 152 | 464 | 152 | 292 | 286 | 97.9452 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 43.6411 | 76.8293 | 30.4762 | 68.5864 | 126 | 38 | 128 | 292 | 286 | 97.9452 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.2857 | 0.0000 | 0.0000 | 1 | 349 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 39.3701 | 24.5098 | 100.0000 | 62.5000 | 25 | 77 | 24 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 55.6802 | 53.5032 | 58.0420 | 68.9130 | 84 | 73 | 83 | 60 | 52 | 86.6667 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 64.4256 | 95.0820 | 48.7179 | 70.6767 | 58 | 3 | 57 | 60 | 52 | 86.6667 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 51 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 73.2394 | 57.7778 | 100.0000 | 57.3770 | 26 | 19 | 26 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 19.5122 | 17.3913 | 22.2222 | 55.5556 | 8 | 38 | 8 | 28 | 27 | 96.4286 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 20.5128 | 50.0000 | 12.9032 | 57.5342 | 4 | 4 | 4 | 27 | 26 | 96.2963 | |
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 25 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 44.4444 | 30.7692 | 80.0000 | 37.5000 | 4 | 9 | 4 | 1 | 1 | 100.0000 | |