PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38201-38250 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | C16_PLUS | map_siren | * | 0.0000 | 0.0000 | 25.0000 | 98.3193 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_siren | het | 0.0000 | 0.0000 | 25.0000 | 98.0769 | 0 | 0 | 1 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C16_PLUS | map_siren | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | C16_PLUS | segdup | * | 0.0000 | 0.0000 | 33.3333 | 98.7854 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C16_PLUS | segdup | het | 0.0000 | 0.0000 | 99.0654 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C16_PLUS | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C16_PLUS | segdup | homalt | 0.0000 | 0.0000 | 100.0000 | 96.9697 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | C16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | C16_PLUS | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | C16_PLUS | tech_badpromoters | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C16_PLUS | tech_badpromoters | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C16_PLUS | tech_badpromoters | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C1_5 | * | * | 78.1282 | 80.0000 | 76.3420 | 92.2396 | 8 | 2 | 1607 | 498 | 106 | 21.2851 | |
| gduggal-bwavard | INDEL | C1_5 | * | het | 77.2653 | 88.8889 | 68.3301 | 92.9553 | 8 | 1 | 1068 | 495 | 105 | 21.2121 | |
| gduggal-bwavard | INDEL | C1_5 | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C1_5 | * | homalt | 0.0000 | 0.0000 | 99.4465 | 89.0239 | 0 | 0 | 539 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | C1_5 | HG002complexvar | * | 85.2929 | 85.7143 | 84.8757 | 79.2084 | 6 | 1 | 1605 | 286 | 106 | 37.0629 | |
| gduggal-bwavard | INDEL | C1_5 | HG002complexvar | het | 82.2319 | 85.7143 | 79.0215 | 80.8462 | 6 | 1 | 1066 | 283 | 105 | 37.1025 | |
| gduggal-bwavard | INDEL | C1_5 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 99.4465 | 73.5867 | 0 | 0 | 539 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | C1_5 | HG002compoundhet | * | 0.0000 | 0.0000 | 48.4848 | 84.1346 | 0 | 1 | 144 | 153 | 45 | 29.4118 | |
| gduggal-bwavard | INDEL | C1_5 | HG002compoundhet | het | 0.0000 | 0.0000 | 46.8531 | 84.4057 | 0 | 0 | 134 | 152 | 44 | 28.9474 | |
| gduggal-bwavard | INDEL | C1_5 | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C1_5 | HG002compoundhet | homalt | 0.0000 | 0.0000 | 90.9091 | 71.0526 | 0 | 0 | 10 | 1 | 1 | 100.0000 | |
| gduggal-bwavard | INDEL | C1_5 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | C1_5 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | C1_5 | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C1_5 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | C1_5 | func_cds | * | 0.0000 | 0.0000 | 33.3333 | 91.8919 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C1_5 | func_cds | het | 0.0000 | 0.0000 | 93.1034 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C1_5 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C1_5 | func_cds | homalt | 0.0000 | 0.0000 | 100.0000 | 87.5000 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 32.0000 | 94.1995 | 0 | 0 | 16 | 34 | 4 | 11.7647 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 30.6122 | 94.1106 | 0 | 0 | 15 | 34 | 4 | 11.7647 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 100.0000 | 96.6667 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 68.0394 | 66.6667 | 69.4698 | 94.6639 | 2 | 1 | 380 | 167 | 40 | 23.9521 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 64.3489 | 66.6667 | 62.1868 | 95.0669 | 2 | 1 | 273 | 166 | 40 | 24.0964 | |
| gduggal-bwavard | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | I1_5 | map_l125_m0_e0 | homalt | 96.4362 | 95.6140 | 97.2727 | 79.8165 | 109 | 5 | 107 | 3 | 1 | 33.3333 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m1_e0 | * | 94.6449 | 95.3012 | 93.9976 | 87.8589 | 791 | 39 | 783 | 50 | 20 | 40.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l125_m1_e0 | het | 94.3995 | 98.1481 | 90.9266 | 90.6464 | 477 | 9 | 471 | 47 | 19 | 40.4255 | |