PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37951-38000 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | * | map_l100_m2_e1 | hetalt | 0.0000 | 1.5152 | 0.0000 | 0.0000 | 2 | 130 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l100_m2_e1 | homalt | 95.8810 | 92.6620 | 99.3317 | 77.1434 | 1187 | 94 | 1189 | 8 | 5 | 62.5000 | |
| gduggal-bwavard | INDEL | * | map_l125_m0_e0 | * | 88.9737 | 95.2381 | 83.4826 | 91.4946 | 840 | 42 | 839 | 166 | 31 | 18.6747 | |
| gduggal-bwavard | INDEL | * | map_l125_m0_e0 | het | 86.9907 | 98.1261 | 78.1250 | 92.7637 | 576 | 11 | 575 | 161 | 28 | 17.3913 | |
| gduggal-bwavard | INDEL | * | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 11 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | * | map_l125_m0_e0 | homalt | 95.4792 | 92.9577 | 98.1413 | 83.6474 | 264 | 20 | 264 | 5 | 3 | 60.0000 | |
| gduggal-bwavard | INDEL | * | map_l125_m1_e0 | * | 91.5570 | 95.1115 | 88.2586 | 89.4208 | 2004 | 103 | 2007 | 267 | 71 | 26.5918 | |
| gduggal-bwavard | INDEL | * | map_l125_m1_e0 | het | 90.3770 | 98.4270 | 83.5443 | 91.2553 | 1314 | 21 | 1320 | 260 | 67 | 25.7692 | |
| gduggal-bwavard | INDEL | * | map_l125_m1_e0 | hetalt | 0.0000 | 2.5000 | 0.0000 | 0.0000 | 1 | 39 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l125_m1_e0 | homalt | 96.4972 | 94.1257 | 98.9914 | 79.7491 | 689 | 43 | 687 | 7 | 4 | 57.1429 | |
| gduggal-bwavard | INDEL | * | map_l125_m2_e0 | * | 91.5832 | 95.0364 | 88.3721 | 90.1236 | 2087 | 109 | 2090 | 275 | 74 | 26.9091 | |
| gduggal-bwavard | INDEL | * | map_l125_m2_e0 | het | 90.4577 | 98.4184 | 83.6884 | 91.8376 | 1369 | 22 | 1375 | 268 | 70 | 26.1194 | |
| gduggal-bwavard | INDEL | * | map_l125_m2_e0 | hetalt | 0.0000 | 2.3810 | 0.0000 | 0.0000 | 1 | 41 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l125_m2_e0 | homalt | 96.4345 | 93.9712 | 99.0305 | 81.0846 | 717 | 46 | 715 | 7 | 4 | 57.1429 | |
| gduggal-bwavard | INDEL | * | map_l125_m2_e1 | * | 91.5391 | 94.9663 | 88.3507 | 90.2029 | 2113 | 112 | 2116 | 279 | 77 | 27.5986 | |
| gduggal-bwavard | INDEL | * | map_l125_m2_e1 | het | 90.4455 | 98.4375 | 83.6538 | 91.9035 | 1386 | 22 | 1392 | 272 | 73 | 26.8382 | |
| gduggal-bwavard | INDEL | * | map_l125_m2_e1 | hetalt | 0.0000 | 2.3256 | 0.0000 | 0.0000 | 1 | 42 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l125_m2_e1 | homalt | 96.3491 | 93.7984 | 99.0424 | 81.2275 | 726 | 48 | 724 | 7 | 4 | 57.1429 | |
| gduggal-bwavard | INDEL | * | map_l150_m0_e0 | * | 85.7904 | 93.9689 | 78.9216 | 93.5231 | 483 | 31 | 483 | 129 | 24 | 18.6047 | |
| gduggal-bwavard | INDEL | * | map_l150_m0_e0 | het | 83.4371 | 98.2405 | 72.5108 | 94.3348 | 335 | 6 | 335 | 127 | 22 | 17.3228 | |
| gduggal-bwavard | INDEL | * | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 9 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | * | map_l150_m0_e0 | homalt | 94.2675 | 90.2439 | 98.6667 | 88.4080 | 148 | 16 | 148 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | * | map_l150_m1_e0 | * | 90.3416 | 95.3662 | 85.8199 | 91.3779 | 1276 | 62 | 1277 | 211 | 47 | 22.2749 | |
| gduggal-bwavard | INDEL | * | map_l150_m1_e0 | het | 88.6308 | 98.5965 | 80.4948 | 92.7959 | 843 | 12 | 846 | 205 | 44 | 21.4634 | |
| gduggal-bwavard | INDEL | * | map_l150_m1_e0 | hetalt | 0.0000 | 4.7619 | 0.0000 | 0.0000 | 1 | 20 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l150_m1_e0 | homalt | 95.9985 | 93.5065 | 98.6270 | 83.6268 | 432 | 30 | 431 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | * | map_l150_m2_e0 | * | 90.6383 | 95.5256 | 86.2268 | 91.9474 | 1345 | 63 | 1346 | 215 | 47 | 21.8605 | |
| gduggal-bwavard | INDEL | * | map_l150_m2_e0 | het | 88.9752 | 98.5651 | 81.0860 | 93.2486 | 893 | 13 | 896 | 209 | 44 | 21.0526 | |
| gduggal-bwavard | INDEL | * | map_l150_m2_e0 | hetalt | 0.0000 | 4.7619 | 0.0000 | 0.0000 | 1 | 20 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l150_m2_e0 | homalt | 96.1607 | 93.7630 | 98.6842 | 84.8907 | 451 | 30 | 450 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | * | map_l150_m2_e1 | * | 90.5345 | 95.2745 | 86.2437 | 91.9653 | 1371 | 68 | 1373 | 219 | 51 | 23.2877 | |
| gduggal-bwavard | INDEL | * | map_l150_m2_e1 | het | 89.0053 | 98.5931 | 81.1170 | 93.2572 | 911 | 13 | 915 | 213 | 48 | 22.5352 | |
| gduggal-bwavard | INDEL | * | map_l150_m2_e1 | hetalt | 0.0000 | 4.3478 | 0.0000 | 0.0000 | 1 | 22 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l150_m2_e1 | homalt | 95.9235 | 93.2927 | 98.7069 | 84.9595 | 459 | 33 | 458 | 6 | 3 | 50.0000 | |
| gduggal-bwavard | INDEL | * | map_l250_m0_e0 | * | 75.2577 | 93.5897 | 62.9310 | 97.7692 | 73 | 5 | 73 | 43 | 2 | 4.6512 | |
| gduggal-bwavard | INDEL | * | map_l250_m0_e0 | het | 69.3878 | 96.2264 | 54.2553 | 97.9008 | 51 | 2 | 51 | 43 | 2 | 4.6512 | |
| gduggal-bwavard | INDEL | * | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwavard | INDEL | * | map_l250_m0_e0 | homalt | 93.6170 | 88.0000 | 100.0000 | 96.9529 | 22 | 3 | 22 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l250_m1_e0 | * | 82.3699 | 93.4426 | 73.6434 | 96.1257 | 285 | 20 | 285 | 102 | 15 | 14.7059 | |
| gduggal-bwavard | INDEL | * | map_l250_m1_e0 | het | 77.8894 | 96.8421 | 65.1408 | 96.6811 | 184 | 6 | 185 | 99 | 13 | 13.1313 | |
| gduggal-bwavard | INDEL | * | map_l250_m1_e0 | hetalt | 0.0000 | 16.6667 | 0.0000 | 0.0000 | 1 | 5 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l250_m1_e0 | homalt | 94.3396 | 91.7431 | 97.0874 | 92.8073 | 100 | 9 | 100 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | * | map_l250_m2_e0 | * | 83.4899 | 93.9577 | 75.1208 | 96.3544 | 311 | 20 | 311 | 103 | 15 | 14.5631 | |
| gduggal-bwavard | INDEL | * | map_l250_m2_e0 | het | 79.4528 | 97.1429 | 67.2131 | 96.8634 | 204 | 6 | 205 | 100 | 13 | 13.0000 | |
| gduggal-bwavard | INDEL | * | map_l250_m2_e0 | hetalt | 0.0000 | 16.6667 | 0.0000 | 0.0000 | 1 | 5 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l250_m2_e0 | homalt | 94.6429 | 92.1739 | 97.2477 | 93.3211 | 106 | 9 | 106 | 3 | 2 | 66.6667 | |
| gduggal-bwavard | INDEL | * | map_l250_m2_e1 | * | 83.5781 | 93.9940 | 75.2404 | 96.4341 | 313 | 20 | 313 | 103 | 15 | 14.5631 | |
| gduggal-bwavard | INDEL | * | map_l250_m2_e1 | het | 79.5322 | 97.1564 | 67.3203 | 96.9369 | 205 | 6 | 206 | 100 | 13 | 13.0000 | |
| gduggal-bwavard | INDEL | * | map_l250_m2_e1 | hetalt | 0.0000 | 16.6667 | 0.0000 | 0.0000 | 1 | 5 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l250_m2_e1 | homalt | 94.6903 | 92.2414 | 97.2727 | 93.4368 | 107 | 9 | 107 | 3 | 2 | 66.6667 | |