PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37601-37650 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | ti | map_l250_m1_e0 | het | 57.3348 | 40.2965 | 99.3367 | 97.5609 | 1196 | 1772 | 1198 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | SNP | ti | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | map_l250_m1_e0 | homalt | 47.5332 | 31.1761 | 100.0000 | 95.0135 | 501 | 1106 | 500 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l250_m2_e0 | * | 56.1308 | 39.0775 | 99.5931 | 97.1311 | 1957 | 3051 | 1958 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | SNP | ti | map_l250_m2_e0 | het | 59.6085 | 42.5630 | 99.4265 | 97.5359 | 1385 | 1869 | 1387 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | SNP | ti | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | map_l250_m2_e0 | homalt | 49.2891 | 32.7044 | 100.0000 | 95.1810 | 572 | 1177 | 571 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l250_m2_e1 | * | 56.1811 | 39.1253 | 99.5990 | 97.1464 | 1986 | 3090 | 1987 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | SNP | ti | map_l250_m2_e1 | het | 59.7244 | 42.6796 | 99.4358 | 97.5469 | 1408 | 1891 | 1410 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | SNP | ti | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | map_l250_m2_e1 | homalt | 49.1915 | 32.6185 | 100.0000 | 95.2072 | 578 | 1194 | 577 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_siren | * | 90.8656 | 83.6301 | 99.4716 | 68.7099 | 83927 | 16428 | 83958 | 446 | 118 | 26.4574 | |
| gduggal-bwaplat | SNP | ti | map_siren | het | 92.8447 | 87.2527 | 99.2026 | 72.7353 | 54430 | 7952 | 54492 | 438 | 111 | 25.3425 | |
| gduggal-bwaplat | SNP | ti | map_siren | hetalt | 79.1667 | 66.6667 | 97.4359 | 82.5893 | 38 | 19 | 38 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_siren | homalt | 87.4388 | 77.6954 | 99.9762 | 56.7476 | 29459 | 8457 | 29428 | 7 | 6 | 85.7143 | |
| gduggal-bwaplat | SNP | ti | segdup | * | 98.6403 | 98.0243 | 99.2642 | 93.3166 | 19151 | 386 | 19157 | 142 | 9 | 6.3380 | |
| gduggal-bwaplat | SNP | ti | segdup | het | 98.4906 | 98.1463 | 98.8374 | 94.7165 | 11807 | 223 | 11817 | 139 | 6 | 4.3166 | |
| gduggal-bwaplat | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.1667 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | segdup | homalt | 98.8821 | 97.8281 | 99.9591 | 88.2036 | 7342 | 163 | 7338 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | tech_badpromoters | * | 93.8272 | 89.4118 | 98.7013 | 57.6923 | 76 | 9 | 76 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | ti | tech_badpromoters | het | 92.8571 | 88.6364 | 97.5000 | 65.2174 | 39 | 5 | 39 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | ti | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | SNP | ti | tech_badpromoters | homalt | 94.8718 | 90.2439 | 100.0000 | 44.7761 | 37 | 4 | 37 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | * | * | 98.5599 | 97.4574 | 99.6876 | 31.4101 | 945035 | 24655 | 945254 | 2962 | 440 | 14.8548 | |
| gduggal-bwaplat | SNP | tv | * | het | 98.5255 | 97.5640 | 99.5062 | 36.2003 | 577282 | 14414 | 577577 | 2866 | 351 | 12.2470 | |
| gduggal-bwaplat | SNP | tv | * | hetalt | 95.9084 | 92.8817 | 99.1390 | 56.6631 | 809 | 62 | 806 | 7 | 7 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | * | homalt | 98.6202 | 97.3009 | 99.9757 | 22.0523 | 366944 | 10179 | 366871 | 89 | 82 | 92.1348 | |
| gduggal-bwaplat | SNP | tv | HG002complexvar | * | 97.3488 | 95.7603 | 98.9909 | 25.1801 | 235716 | 10436 | 235930 | 2405 | 362 | 15.0520 | |
| gduggal-bwaplat | SNP | tv | HG002complexvar | het | 97.0873 | 95.7892 | 98.4210 | 25.5027 | 144384 | 6347 | 144674 | 2321 | 283 | 12.1930 | |
| gduggal-bwaplat | SNP | tv | HG002complexvar | hetalt | 90.9054 | 83.8710 | 99.2278 | 44.0605 | 260 | 50 | 257 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | tv | HG002complexvar | homalt | 97.7875 | 95.7534 | 99.9100 | 24.5806 | 91072 | 4039 | 90999 | 82 | 77 | 93.9024 | |
| gduggal-bwaplat | SNP | tv | HG002compoundhet | * | 87.7776 | 87.6611 | 87.8944 | 56.9502 | 7822 | 1101 | 7856 | 1082 | 151 | 13.9556 | |
| gduggal-bwaplat | SNP | tv | HG002compoundhet | het | 81.9141 | 84.1429 | 79.8002 | 62.7770 | 3932 | 741 | 3994 | 1011 | 84 | 8.3086 | |
| gduggal-bwaplat | SNP | tv | HG002compoundhet | hetalt | 96.3319 | 92.9234 | 100.0000 | 22.7493 | 801 | 61 | 798 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | HG002compoundhet | homalt | 94.3411 | 91.1747 | 97.7352 | 50.1035 | 3089 | 299 | 3064 | 71 | 67 | 94.3662 | |
| gduggal-bwaplat | SNP | tv | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | tv | func_cds | * | 99.4027 | 98.9934 | 99.8155 | 42.5143 | 4327 | 44 | 4327 | 8 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | tv | func_cds | het | 99.3960 | 99.0967 | 99.6971 | 49.3090 | 2633 | 24 | 2633 | 8 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | tv | func_cds | hetalt | 94.7368 | 90.0000 | 100.0000 | 57.1429 | 9 | 1 | 9 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | func_cds | homalt | 99.4394 | 98.8850 | 100.0000 | 27.0563 | 1685 | 19 | 1685 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 90.3792 | 84.8945 | 96.6216 | 83.4493 | 1287 | 229 | 1287 | 45 | 5 | 11.1111 | |
| gduggal-bwaplat | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 88.7695 | 83.2661 | 95.0518 | 86.1448 | 826 | 166 | 826 | 43 | 4 | 9.3023 | |
| gduggal-bwaplat | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||