PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37551-37600 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 49.2754 | 33.3333 | 94.4444 | 98.9263 | 34 | 68 | 34 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 48.4429 | 34.1463 | 83.3333 | 97.1246 | 14 | 27 | 15 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 87.3886 | 77.9606 | 99.4105 | 51.5253 | 5734 | 1621 | 5734 | 34 | 6 | 17.6471 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 86.7998 | 77.2097 | 99.1101 | 56.3009 | 3564 | 1052 | 3564 | 32 | 5 | 15.6250 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 88.3910 | 79.2549 | 99.9079 | 40.8013 | 2170 | 568 | 2170 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 61.5385 | 44.4444 | 100.0000 | 99.2157 | 4 | 5 | 4 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 60.0000 | 42.8571 | 100.0000 | 99.3088 | 3 | 4 | 3 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 98.6842 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | SNP | * | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | map_l100_m0_e0 | * | 72.1141 | 56.5817 | 99.4011 | 87.0646 | 18582 | 14259 | 18588 | 112 | 36 | 32.1429 | |
| gduggal-bwaplat | SNP | * | map_l100_m0_e0 | het | 76.0794 | 61.7119 | 99.1672 | 89.0304 | 13086 | 8119 | 13098 | 110 | 34 | 30.9091 | |
| gduggal-bwaplat | SNP | * | map_l100_m0_e0 | hetalt | 54.5455 | 37.5000 | 100.0000 | 94.8276 | 6 | 10 | 6 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l100_m0_e0 | homalt | 64.1655 | 47.2461 | 99.9635 | 77.1816 | 5490 | 6130 | 5484 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_l100_m1_e0 | * | 82.4562 | 70.4418 | 99.4115 | 81.1732 | 51002 | 21401 | 51014 | 302 | 83 | 27.4834 | |
| gduggal-bwaplat | SNP | * | map_l100_m1_e0 | het | 86.2179 | 76.2737 | 99.1438 | 83.9192 | 34597 | 10762 | 34621 | 299 | 80 | 26.7559 | |
| gduggal-bwaplat | SNP | * | map_l100_m1_e0 | hetalt | 71.8750 | 56.0976 | 100.0000 | 90.3361 | 23 | 18 | 23 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l100_m1_e0 | homalt | 75.5140 | 60.6673 | 99.9817 | 70.3269 | 16382 | 10621 | 16370 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_l100_m2_e0 | * | 82.8217 | 70.9791 | 99.4075 | 82.3292 | 52499 | 21465 | 52511 | 313 | 86 | 27.4760 | |
| gduggal-bwaplat | SNP | * | map_l100_m2_e0 | het | 86.5211 | 76.7517 | 99.1404 | 84.8771 | 35612 | 10787 | 35636 | 309 | 82 | 26.5372 | |
| gduggal-bwaplat | SNP | * | map_l100_m2_e0 | hetalt | 72.7273 | 57.1429 | 100.0000 | 91.3669 | 24 | 18 | 24 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l100_m2_e0 | homalt | 75.9766 | 61.2688 | 99.9763 | 72.3553 | 16863 | 10660 | 16851 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_l100_m2_e1 | * | 82.9577 | 71.1789 | 99.4078 | 82.2985 | 53197 | 21540 | 53209 | 317 | 87 | 27.4448 | |
| gduggal-bwaplat | SNP | * | map_l100_m2_e1 | het | 86.6430 | 76.9436 | 99.1406 | 84.8541 | 36085 | 10813 | 36109 | 313 | 83 | 26.5176 | |
| gduggal-bwaplat | SNP | * | map_l100_m2_e1 | hetalt | 73.5294 | 58.1395 | 100.0000 | 91.0394 | 25 | 18 | 25 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l100_m2_e1 | homalt | 76.1334 | 61.4729 | 99.9766 | 72.2874 | 17087 | 10709 | 17075 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_l125_m0_e0 | * | 63.0515 | 46.1852 | 99.3234 | 91.8350 | 8953 | 10432 | 8955 | 61 | 21 | 34.4262 | |
| gduggal-bwaplat | SNP | * | map_l125_m0_e0 | het | 67.0117 | 50.6238 | 99.0887 | 93.0436 | 6411 | 6253 | 6415 | 59 | 19 | 32.2034 | |
| gduggal-bwaplat | SNP | * | map_l125_m0_e0 | hetalt | 20.0000 | 11.1111 | 100.0000 | 98.9796 | 1 | 8 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l125_m0_e0 | homalt | 54.9108 | 37.8576 | 99.9213 | 85.2772 | 2541 | 4171 | 2539 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_l125_m1_e0 | * | 74.4387 | 59.4965 | 99.4030 | 86.9422 | 26968 | 18359 | 26975 | 162 | 46 | 28.3951 | |
| gduggal-bwaplat | SNP | * | map_l125_m1_e0 | het | 79.2823 | 66.0433 | 99.1598 | 88.7864 | 18751 | 9641 | 18765 | 159 | 43 | 27.0440 | |
| gduggal-bwaplat | SNP | * | map_l125_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 92.0635 | 15 | 15 | 15 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l125_m1_e0 | homalt | 65.3285 | 48.5182 | 99.9634 | 78.9108 | 8202 | 8703 | 8195 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_l125_m2_e0 | * | 75.1671 | 60.4306 | 99.4087 | 87.7400 | 28235 | 18488 | 28242 | 168 | 47 | 27.9762 | |
| gduggal-bwaplat | SNP | * | map_l125_m2_e0 | het | 79.9285 | 66.9418 | 99.1669 | 89.4354 | 19626 | 9692 | 19640 | 165 | 44 | 26.6667 | |
| gduggal-bwaplat | SNP | * | map_l125_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 93.3628 | 15 | 15 | 15 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l125_m2_e0 | homalt | 66.1790 | 49.4619 | 99.9651 | 80.4937 | 8594 | 8781 | 8587 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | map_l250_m0_e0 | homalt | 45.6637 | 29.5872 | 100.0000 | 97.2939 | 129 | 307 | 129 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | map_l250_m1_e0 | * | 54.0102 | 37.0605 | 99.5311 | 97.1343 | 1697 | 2882 | 1698 | 8 | 2 | 25.0000 | |