PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37251-37300 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | I1_5 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | tech_badpromoters | * | 87.1795 | 77.2727 | 100.0000 | 73.4375 | 17 | 5 | 17 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 75.7576 | 8 | 0 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | tech_badpromoters | homalt | 76.1905 | 61.5385 | 100.0000 | 70.3704 | 8 | 5 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | * | * | 86.3949 | 77.4322 | 97.7041 | 60.0483 | 19221 | 5602 | 19235 | 452 | 296 | 65.4867 | |
| gduggal-bwaplat | INDEL | I6_15 | * | het | 84.1633 | 73.9659 | 97.6222 | 67.9845 | 7421 | 2612 | 7431 | 181 | 55 | 30.3867 | |
| gduggal-bwaplat | INDEL | I6_15 | * | hetalt | 85.2525 | 75.5818 | 97.7610 | 47.7759 | 6463 | 2088 | 6462 | 148 | 138 | 93.2432 | |
| gduggal-bwaplat | INDEL | I6_15 | * | homalt | 91.2395 | 85.5426 | 97.7493 | 57.4509 | 5337 | 902 | 5342 | 123 | 103 | 83.7398 | |
| gduggal-bwaplat | INDEL | I6_15 | HG002complexvar | * | 86.2963 | 77.2538 | 97.7362 | 64.0519 | 3702 | 1090 | 3713 | 86 | 50 | 58.1395 | |
| gduggal-bwaplat | INDEL | I6_15 | HG002complexvar | het | 84.5433 | 74.6497 | 97.4600 | 66.9103 | 1758 | 597 | 1765 | 46 | 16 | 34.7826 | |
| gduggal-bwaplat | INDEL | I6_15 | HG002complexvar | hetalt | 84.1254 | 73.6713 | 98.0371 | 62.0604 | 901 | 322 | 899 | 18 | 17 | 94.4444 | |
| gduggal-bwaplat | INDEL | I6_15 | HG002complexvar | homalt | 91.5364 | 85.9143 | 97.9458 | 60.0075 | 1043 | 171 | 1049 | 22 | 17 | 77.2727 | |
| gduggal-bwaplat | INDEL | I6_15 | HG002compoundhet | * | 84.8012 | 75.3988 | 96.8828 | 44.4562 | 6617 | 2159 | 6620 | 213 | 132 | 61.9718 | |
| gduggal-bwaplat | INDEL | I6_15 | HG002compoundhet | het | 65.8766 | 65.8654 | 65.8879 | 86.4385 | 137 | 71 | 141 | 73 | 16 | 21.9178 | |
| gduggal-bwaplat | INDEL | I6_15 | HG002compoundhet | hetalt | 85.9482 | 75.6238 | 99.5374 | 35.2988 | 6456 | 2081 | 6455 | 30 | 20 | 66.6667 | |
| gduggal-bwaplat | INDEL | I6_15 | HG002compoundhet | homalt | 29.0909 | 77.4194 | 17.9104 | 80.8845 | 24 | 7 | 24 | 110 | 96 | 87.2727 | |
| gduggal-bwaplat | INDEL | I6_15 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | func_cds | * | 87.1795 | 79.0698 | 97.1429 | 43.5484 | 34 | 9 | 34 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | func_cds | het | 85.7143 | 75.0000 | 100.0000 | 48.5714 | 18 | 6 | 18 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | func_cds | hetalt | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | func_cds | homalt | 89.6552 | 86.6667 | 92.8571 | 39.1304 | 13 | 2 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 64.8475 | 48.3254 | 98.5366 | 81.1754 | 404 | 432 | 404 | 6 | 3 | 50.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 64.1348 | 47.7733 | 97.5410 | 89.6698 | 118 | 129 | 119 | 3 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 63.8458 | 46.9811 | 99.5984 | 65.4167 | 249 | 281 | 248 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 75.5102 | 62.7119 | 94.8718 | 85.9206 | 37 | 22 | 37 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 76.6225 | 63.6808 | 96.1659 | 75.3638 | 3384 | 1930 | 3386 | 135 | 45 | 33.3333 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 65.6044 | 51.5250 | 90.2715 | 87.2106 | 794 | 747 | 798 | 86 | 3 | 3.4884 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 82.8931 | 71.4423 | 98.7151 | 55.3864 | 2229 | 891 | 2228 | 29 | 26 | 89.6552 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 69.8222 | 55.2833 | 94.7368 | 83.6277 | 361 | 292 | 360 | 20 | 16 | 80.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 72.7559 | 58.4625 | 96.3002 | 76.5890 | 3696 | 2626 | 3696 | 142 | 55 | 38.7324 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 61.6323 | 46.5246 | 91.2698 | 88.3076 | 917 | 1054 | 920 | 88 | 9 | 10.2273 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 79.5052 | 66.5627 | 98.6958 | 53.7549 | 2347 | 1179 | 2346 | 31 | 28 | 90.3226 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 67.4944 | 52.3636 | 94.9227 | 82.7953 | 432 | 393 | 430 | 23 | 18 | 78.2609 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 79.3333 | 66.8539 | 97.5410 | 81.8452 | 119 | 59 | 119 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 77.9624 | 65.4321 | 96.4286 | 87.1854 | 53 | 28 | 54 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 80.3922 | 67.2131 | 100.0000 | 65.8120 | 41 | 20 | 40 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 80.6452 | 69.4444 | 96.1538 | 77.9661 | 25 | 11 | 25 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||