PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37151-37200 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 72.2144 | 57.9892 | 95.6871 | 78.8764 | 2261 | 1638 | 2263 | 102 | 21 | 20.5882 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 64.6064 | 50.2642 | 90.4008 | 85.4064 | 856 | 847 | 857 | 91 | 11 | 12.0879 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 84.4037 | 73.2095 | 99.6390 | 55.5377 | 828 | 303 | 828 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 69.9400 | 54.1784 | 98.6348 | 79.3006 | 577 | 488 | 578 | 8 | 7 | 87.5000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 63.8821 | 48.3271 | 94.2029 | 88.6792 | 130 | 139 | 130 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 45.9459 | 33.3333 | 73.9130 | 97.2684 | 17 | 34 | 17 | 6 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 68.0723 | 52.0737 | 98.2609 | 59.9303 | 113 | 104 | 113 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 68.7772 | 52.7619 | 98.7522 | 77.3150 | 554 | 496 | 554 | 7 | 2 | 28.5714 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 53.9291 | 37.2340 | 97.7654 | 86.7506 | 175 | 295 | 175 | 4 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 88.6525 | 79.8722 | 99.6016 | 46.2527 | 250 | 63 | 250 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 64.8241 | 48.3146 | 98.4733 | 80.0000 | 129 | 138 | 129 | 2 | 1 | 50.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 78.0488 | 64.0000 | 100.0000 | 72.8814 | 16 | 9 | 16 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 82.0513 | 69.5652 | 100.0000 | 20.0000 | 16 | 7 | 16 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m0_e0 | * | 71.3781 | 55.8011 | 99.0196 | 94.2286 | 303 | 240 | 303 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m0_e0 | het | 75.6144 | 61.3497 | 98.5222 | 94.8055 | 200 | 126 | 200 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 61.5385 | 44.4444 | 100.0000 | 98.6301 | 4 | 5 | 4 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m0_e0 | homalt | 64.4951 | 47.5962 | 100.0000 | 91.0163 | 99 | 109 | 99 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m1_e0 | * | 79.6064 | 66.4675 | 99.2196 | 91.7555 | 890 | 449 | 890 | 7 | 2 | 28.5714 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m1_e0 | het | 83.8279 | 72.7156 | 98.9492 | 92.4321 | 565 | 212 | 565 | 6 | 1 | 16.6667 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 70.5882 | 54.5455 | 100.0000 | 96.4392 | 24 | 20 | 24 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m1_e0 | homalt | 73.4146 | 58.1081 | 99.6689 | 88.6509 | 301 | 217 | 301 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e0 | * | 79.7551 | 66.6667 | 99.2383 | 92.3930 | 912 | 456 | 912 | 7 | 2 | 28.5714 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e0 | het | 83.8663 | 72.7617 | 98.9708 | 93.0529 | 577 | 216 | 577 | 6 | 1 | 16.6667 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 70.5882 | 54.5455 | 100.0000 | 96.7611 | 24 | 20 | 24 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e0 | homalt | 73.7841 | 58.5687 | 99.6795 | 89.4166 | 311 | 220 | 311 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e1 | * | 80.0171 | 67.0251 | 99.2569 | 92.4026 | 935 | 460 | 935 | 7 | 2 | 28.5714 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e1 | het | 84.0909 | 73.0864 | 98.9967 | 93.0683 | 592 | 218 | 592 | 6 | 1 | 16.6667 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 71.4286 | 55.5556 | 100.0000 | 96.7018 | 25 | 20 | 25 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l100_m2_e1 | homalt | 74.0396 | 58.8889 | 99.6865 | 89.4161 | 318 | 222 | 318 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m0_e0 | * | 65.2174 | 48.3871 | 100.0000 | 96.3154 | 150 | 160 | 150 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m0_e0 | het | 67.1280 | 50.5208 | 100.0000 | 96.7944 | 97 | 95 | 97 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 40.0000 | 25.0000 | 100.0000 | 99.5370 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m0_e0 | homalt | 62.6506 | 45.6140 | 100.0000 | 93.7274 | 52 | 62 | 52 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m1_e0 | * | 74.9249 | 60.1205 | 99.4024 | 93.7871 | 499 | 331 | 499 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m1_e0 | het | 79.2593 | 66.0494 | 99.0741 | 94.2776 | 321 | 165 | 321 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 69.2308 | 52.9412 | 100.0000 | 98.0176 | 9 | 8 | 9 | 0 | 0 | ||