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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37101-37150 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 82.6590 | 71.5000 | 97.9452 | 72.2960 | 143 | 57 | 143 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.9514 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.6301 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 78.2617 | 65.5172 | 97.1616 | 84.3499 | 893 | 470 | 890 | 26 | 7 | 26.9231 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 77.8824 | 65.8473 | 95.3008 | 85.1934 | 509 | 264 | 507 | 25 | 6 | 24.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 80.4233 | 67.8571 | 98.7013 | 83.6518 | 76 | 36 | 76 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 78.3715 | 64.4351 | 100.0000 | 82.8396 | 308 | 170 | 307 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 76.6352 | 62.5131 | 99.0000 | 87.0298 | 597 | 358 | 594 | 6 | 1 | 16.6667 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 76.2512 | 62.2951 | 98.2659 | 87.5405 | 342 | 207 | 340 | 6 | 1 | 16.6667 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 78.7879 | 65.0000 | 100.0000 | 89.2265 | 39 | 21 | 39 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 76.8683 | 62.4277 | 100.0000 | 85.5414 | 216 | 130 | 215 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 64.9523 | 50.2994 | 91.6515 | 76.9456 | 504 | 498 | 505 | 46 | 8 | 17.3913 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 58.5323 | 47.2222 | 76.9663 | 86.5964 | 136 | 152 | 137 | 41 | 3 | 7.3171 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 67.6379 | 51.4241 | 98.7842 | 56.3081 | 325 | 307 | 325 | 4 | 4 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 68.2540 | 52.4390 | 97.7273 | 85.7605 | 43 | 39 | 43 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 76.5373 | 63.7864 | 95.6597 | 61.8480 | 4407 | 2502 | 4408 | 200 | 55 | 27.5000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 59.1321 | 46.1872 | 82.1586 | 80.3718 | 745 | 868 | 746 | 162 | 24 | 14.8148 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 83.4019 | 71.9604 | 99.1696 | 43.2419 | 3344 | 1303 | 3344 | 28 | 26 | 92.8571 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 65.0972 | 48.9985 | 96.9512 | 78.2925 | 318 | 331 | 318 | 10 | 5 | 50.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 78.1600 | 65.8800 | 96.0669 | 59.7785 | 3908 | 2024 | 3908 | 160 | 48 | 30.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 58.9260 | 45.7207 | 82.8571 | 79.6003 | 609 | 723 | 609 | 126 | 21 | 16.6667 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 85.4276 | 75.0062 | 99.2121 | 42.1023 | 3022 | 1007 | 3022 | 24 | 22 | 91.6667 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 64.5688 | 48.5114 | 96.5157 | 77.0400 | 277 | 294 | 277 | 10 | 5 | 50.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 76.9390 | 64.2764 | 95.8149 | 73.3607 | 5405 | 3004 | 5403 | 236 | 65 | 27.5424 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 66.1428 | 53.3144 | 87.1011 | 85.8167 | 1311 | 1148 | 1310 | 194 | 30 | 15.4639 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 83.2726 | 71.7728 | 99.1604 | 47.4357 | 3425 | 1347 | 3425 | 29 | 27 | 93.1034 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 71.9347 | 56.7912 | 98.0910 | 82.9452 | 669 | 509 | 668 | 13 | 8 | 61.5385 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 73.9166 | 60.1605 | 95.8284 | 81.8541 | 9672 | 6405 | 9671 | 421 | 148 | 35.1544 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 68.0328 | 54.2991 | 91.0658 | 88.7322 | 3486 | 2934 | 3486 | 342 | 80 | 23.3918 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 80.8933 | 68.5041 | 98.7531 | 57.3514 | 4039 | 1857 | 4039 | 51 | 49 | 96.0784 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 72.3381 | 57.0859 | 98.7121 | 81.9630 | 2147 | 1614 | 2146 | 28 | 19 | 67.8571 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 81.2908 | 70.4641 | 96.0486 | 65.7173 | 4039 | 1693 | 4035 | 166 | 29 | 17.4699 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 74.0031 | 64.7102 | 86.4125 | 82.4649 | 882 | 481 | 884 | 139 | 8 | 5.7554 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 84.4268 | 73.3771 | 99.3944 | 39.7122 | 2792 | 1013 | 2790 | 17 | 15 | 88.2353 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 77.7331 | 64.7163 | 97.3046 | 78.9683 | 365 | 199 | 361 | 10 | 6 | 60.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 47.0588 | 31.0680 | 96.9697 | 73.0612 | 64 | 142 | 64 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 68.1818 | 55.5556 | 88.2353 | 84.5455 | 15 | 12 | 15 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 42.9825 | 27.3743 | 100.0000 | 60.1626 | 49 | 130 | 49 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 87.5758 | 78.1038 | 99.6623 | 73.9048 | 2076 | 582 | 2066 | 7 | 7 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 87.8108 | 78.3843 | 99.8145 | 76.5550 | 1077 | 297 | 1076 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 77.6923 | 63.9241 | 99.0196 | 81.1460 | 202 | 114 | 202 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 90.1566 | 82.3347 | 99.6207 | 65.0618 | 797 | 171 | 788 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||