PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36751-36800 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | SNP | * | map_l250_m1_e0 | * | 51.9747 | 35.1703 | 99.5300 | 97.3642 | 2540 | 4682 | 2541 | 12 | 3 | 25.0000 | |
| gduggal-bwaplat | SNP | * | map_l250_m1_e0 | het | 55.4141 | 38.4227 | 99.3482 | 97.7302 | 1827 | 2928 | 1829 | 12 | 3 | 25.0000 | |
| gduggal-bwaplat | SNP | * | map_l250_m1_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | map_l250_m1_e0 | homalt | 44.8992 | 28.9484 | 100.0000 | 95.4511 | 713 | 1750 | 712 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l250_m2_e0 | * | 54.0835 | 37.1211 | 99.5918 | 97.3661 | 2927 | 4958 | 2928 | 12 | 3 | 25.0000 | |
| gduggal-bwaplat | SNP | * | map_l250_m2_e0 | het | 57.5846 | 40.5275 | 99.4337 | 97.7208 | 2105 | 3089 | 2107 | 12 | 3 | 25.0000 | |
| gduggal-bwaplat | SNP | * | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | map_l250_m2_e0 | homalt | 46.8643 | 30.6031 | 100.0000 | 95.5710 | 822 | 1864 | 821 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_l250_m2_e1 | * | 54.2324 | 37.2605 | 99.5985 | 97.3745 | 2976 | 5011 | 2977 | 12 | 3 | 25.0000 | |
| gduggal-bwaplat | SNP | * | map_l250_m2_e1 | het | 57.7898 | 40.7295 | 99.4439 | 97.7262 | 2144 | 3120 | 2146 | 12 | 3 | 25.0000 | |
| gduggal-bwaplat | SNP | * | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 5 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | map_l250_m2_e1 | homalt | 46.8732 | 30.6107 | 100.0000 | 95.5861 | 832 | 1886 | 831 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | map_siren | * | 90.0933 | 82.3317 | 99.4705 | 71.0074 | 120392 | 25836 | 120427 | 641 | 167 | 26.0530 | |
| gduggal-bwaplat | SNP | * | map_siren | het | 92.3406 | 86.3635 | 99.2066 | 74.9301 | 78583 | 12408 | 78653 | 629 | 157 | 24.9603 | |
| gduggal-bwaplat | SNP | * | map_siren | hetalt | 78.5185 | 65.4321 | 98.1481 | 84.8315 | 53 | 28 | 53 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | SNP | * | map_siren | homalt | 86.1632 | 75.7053 | 99.9736 | 58.6738 | 41756 | 13400 | 41721 | 11 | 9 | 81.8182 | |
| gduggal-bwaplat | SNP | * | segdup | * | 98.6033 | 97.9585 | 99.2566 | 93.9219 | 27494 | 573 | 27505 | 206 | 20 | 9.7087 | |
| gduggal-bwaplat | SNP | * | segdup | het | 98.4496 | 98.0539 | 98.8484 | 95.2313 | 16980 | 337 | 16996 | 198 | 12 | 6.0606 | |
| gduggal-bwaplat | SNP | * | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.1771 | 7 | 0 | 7 | 0 | 0 | ||
| gduggal-bwaplat | SNP | * | segdup | homalt | 98.8522 | 97.8032 | 99.9239 | 88.9336 | 10507 | 236 | 10502 | 8 | 8 | 100.0000 | |
| gduggal-bwaplat | SNP | * | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | * | tech_badpromoters | * | 92.8814 | 87.2611 | 99.2754 | 66.7470 | 137 | 20 | 137 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | * | tech_badpromoters | het | 93.1507 | 88.3117 | 98.5507 | 74.5387 | 68 | 9 | 68 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | SNP | * | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | SNP | * | tech_badpromoters | homalt | 92.6174 | 86.2500 | 100.0000 | 52.0833 | 69 | 11 | 69 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | * | * | 99.0047 | 98.3196 | 99.6994 | 24.2468 | 2050467 | 35044 | 2050804 | 6183 | 880 | 14.2326 | |
| gduggal-bwaplat | SNP | ti | * | het | 98.9567 | 98.3966 | 99.5232 | 28.0886 | 1261337 | 20554 | 1261923 | 6046 | 762 | 12.6034 | |
| gduggal-bwaplat | SNP | ti | * | hetalt | 95.4648 | 92.2680 | 98.8909 | 56.0163 | 537 | 45 | 535 | 6 | 6 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | * | homalt | 99.0843 | 98.2012 | 99.9834 | 17.0820 | 788593 | 14445 | 788346 | 131 | 112 | 85.4962 | |
| gduggal-bwaplat | SNP | ti | HG002complexvar | * | 97.9838 | 97.0464 | 98.9394 | 19.5056 | 493419 | 15017 | 493754 | 5293 | 700 | 13.2250 | |
| gduggal-bwaplat | SNP | ti | HG002complexvar | het | 97.7064 | 97.0801 | 98.3410 | 19.6959 | 305575 | 9191 | 306161 | 5165 | 589 | 11.4037 | |
| gduggal-bwaplat | SNP | ti | HG002complexvar | hetalt | 89.7041 | 82.1256 | 98.8235 | 43.1438 | 170 | 37 | 168 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | SNP | ti | HG002complexvar | homalt | 98.4485 | 97.0077 | 99.9328 | 19.1570 | 187674 | 5789 | 187425 | 126 | 109 | 86.5079 | |
| gduggal-bwaplat | SNP | ti | HG002compoundhet | * | 89.0817 | 91.8641 | 86.4629 | 42.2720 | 16056 | 1422 | 16121 | 2524 | 263 | 10.4200 | |
| gduggal-bwaplat | SNP | ti | HG002compoundhet | het | 83.6361 | 90.0158 | 78.1008 | 46.8217 | 8556 | 949 | 8677 | 2433 | 181 | 7.4394 | |
| gduggal-bwaplat | SNP | ti | HG002compoundhet | hetalt | 95.9569 | 92.2280 | 100.0000 | 21.9941 | 534 | 45 | 532 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | HG002compoundhet | homalt | 96.4038 | 94.2115 | 98.7006 | 34.6979 | 6966 | 428 | 6912 | 91 | 82 | 90.1099 | |
| gduggal-bwaplat | SNP | ti | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | SNP | ti | func_cds | * | 99.4984 | 99.2747 | 99.7231 | 31.1374 | 13687 | 100 | 13687 | 38 | 4 | 10.5263 | |
| gduggal-bwaplat | SNP | ti | func_cds | het | 99.4112 | 99.2709 | 99.5519 | 36.3268 | 8442 | 62 | 8442 | 38 | 4 | 10.5263 | |
| gduggal-bwaplat | SNP | ti | func_cds | hetalt | 93.3333 | 87.5000 | 100.0000 | 56.2500 | 7 | 1 | 7 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | func_cds | homalt | 99.6481 | 99.2986 | 100.0000 | 20.6003 | 5238 | 37 | 5238 | 0 | 0 | ||
| gduggal-bwaplat | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.2539 | 90.8867 | 97.8801 | 82.7110 | 2952 | 296 | 2955 | 64 | 9 | 14.0625 | |
| gduggal-bwaplat | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.3459 | 90.0692 | 96.8700 | 86.2669 | 1823 | 201 | 1826 | 59 | 4 | 6.7797 | |