PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36501-36550 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 79.8194 | 68.1004 | 96.4103 | 67.2819 | 190 | 89 | 188 | 7 | 7 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 97.3684 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | func_cds | * | 76.1905 | 66.6667 | 88.8889 | 75.6757 | 8 | 4 | 8 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | func_cds | het | 80.0000 | 75.0000 | 85.7143 | 76.6667 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | func_cds | homalt | 66.6667 | 50.0000 | 100.0000 | 66.6667 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 68.7500 | 53.2425 | 97.0034 | 79.7187 | 1133 | 995 | 1133 | 35 | 29 | 82.8571 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 58.6858 | 43.1579 | 91.6667 | 90.6222 | 287 | 378 | 286 | 26 | 22 | 84.6154 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 68.9886 | 52.8205 | 99.4208 | 56.5071 | 515 | 460 | 515 | 3 | 3 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 80.2442 | 67.8279 | 98.2249 | 72.7639 | 331 | 157 | 332 | 6 | 4 | 66.6667 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 40.0000 | 25.0000 | 100.0000 | 99.3902 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 81.6262 | 69.9242 | 98.0323 | 76.4744 | 2490 | 1071 | 2491 | 50 | 39 | 78.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 72.7369 | 58.3764 | 96.4677 | 87.8568 | 791 | 564 | 792 | 29 | 21 | 72.4138 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 85.3755 | 75.1159 | 98.8810 | 48.3447 | 972 | 322 | 972 | 11 | 10 | 90.9091 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 88.1747 | 79.7149 | 98.6431 | 65.5124 | 727 | 185 | 727 | 10 | 8 | 80.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 78.1128 | 65.0730 | 97.6884 | 78.4680 | 3253 | 1746 | 3254 | 77 | 59 | 76.6234 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 69.0451 | 54.2606 | 94.9038 | 89.2027 | 987 | 832 | 987 | 53 | 38 | 71.6981 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 80.2465 | 67.4262 | 99.0868 | 50.5085 | 1302 | 629 | 1302 | 12 | 11 | 91.6667 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 86.6522 | 77.1817 | 98.7718 | 69.3057 | 964 | 285 | 965 | 12 | 10 | 83.3333 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 75.8730 | 62.2396 | 97.1545 | 85.6476 | 239 | 145 | 239 | 7 | 1 | 14.2857 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 64.6777 | 48.7562 | 96.0396 | 90.9091 | 98 | 103 | 97 | 4 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 62.5000 | 45.4545 | 100.0000 | 87.5000 | 5 | 6 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 87.4660 | 79.0698 | 97.8571 | 75.1332 | 136 | 36 | 137 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 40.0000 | 25.0000 | 100.0000 | 99.3590 | 1 | 3 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.7143 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 87.1106 | 77.9126 | 98.7711 | 74.0431 | 642 | 182 | 643 | 8 | 2 | 25.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 81.0596 | 68.9189 | 98.3923 | 80.6832 | 306 | 138 | 306 | 5 | 1 | 20.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 73.3333 | 57.8947 | 100.0000 | 78.0000 | 11 | 8 | 11 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 94.3409 | 90.0277 | 99.0881 | 61.2028 | 325 | 36 | 326 | 3 | 1 | 33.3333 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 92.6089 | 86.4097 | 99.7664 | 61.6487 | 426 | 67 | 427 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 90.0617 | 82.2222 | 99.5536 | 68.6275 | 222 | 48 | 223 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 73.6842 | 58.3333 | 100.0000 | 69.5652 | 7 | 5 | 7 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 96.5686 | 93.3649 | 100.0000 | 48.0211 | 197 | 14 | 197 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 67.9468 | 52.3520 | 96.7742 | 75.1654 | 690 | 628 | 690 | 23 | 22 | 95.6522 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 57.2505 | 41.9890 | 89.9408 | 89.1458 | 152 | 210 | 152 | 17 | 17 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 69.8324 | 53.8020 | 99.4695 | 52.3990 | 375 | 322 | 375 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 76.5258 | 62.9344 | 97.6048 | 68.0077 | 163 | 96 | 163 | 4 | 3 | 75.0000 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 79.8601 | 67.5701 | 97.6148 | 72.4420 | 2169 | 1041 | 2169 | 53 | 50 | 94.3396 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 67.5892 | 52.9680 | 93.3602 | 88.9531 | 464 | 412 | 464 | 33 | 32 | 96.9697 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 83.0162 | 71.4904 | 98.9726 | 45.1128 | 1156 | 461 | 1156 | 12 | 11 | 91.6667 | |
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 86.1852 | 76.5690 | 98.5637 | 61.2117 | 549 | 168 | 549 | 8 | 7 | 87.5000 | |