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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
36301-36350 / 86044 show all
gduggal-bwaplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
82.6140
71.5225
97.7770
46.1187
576422955762131129
98.4733
gduggal-bwaplatINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
85.9154
76.4472
98.0606
64.1454
287988728825753
92.9825
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
83.6519
73.9268
96.3233
56.4236
699224666995267204
76.4045
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
79.1172
68.0571
94.4698
74.1440
1860873186210953
48.6239
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
85.5129
76.5088
96.9190
34.7374
365111213649116114
98.2759
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
85.2150
75.8321
97.2477
53.3761
148147214844237
88.0952
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
50.3713
34.4623
93.5632
71.0771
4077744072821
75.0000
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
53.3937
39.8649
80.8219
88.1107
598959147
50.0000
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
48.6672
32.4541
97.2509
55.2995
28358928388
100.0000
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
56.0345
40.3727
91.5493
70.2929
65966566
100.0000
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10*
82.1997
70.3008
98.9474
87.7261
1877918821
50.0000
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10het
79.0727
65.8065
99.0385
90.3435
1025310310
0.0000
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
79.3651
67.5676
96.1538
69.7674
25122511
100.0000
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
89.5522
81.0811
100.0000
84.4156
60146000
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10*
40.1003
26.3158
84.2105
99.8551
15421630
0.0000
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
36.3636
23.8095
76.9231
99.8504
10321030
0.0000
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
20.0000
11.1111
100.0000
99.9586
18100
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
80.0000
66.6667
100.0000
99.7509
42500
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
80.0966
67.4532
98.5731
65.2719
2487120024873621
58.3333
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
73.1343
58.3082
98.0711
75.8578
965690966196
31.5789
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
85.1332
74.3655
99.5470
43.0323
87930387944
100.0000
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
85.3906
75.6471
98.0153
59.9388
6432076421311
84.6154
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
73.9330
59.3156
98.1108
66.7086
7805357791510
66.6667
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200het
57.0752
40.9091
94.3662
86.2934
13519513483
37.5000
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
75.9907
61.6646
98.9879
43.7998
48930448955
100.0000
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
89.1429
81.2500
98.7342
66.3830
1563615622
100.0000
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
86.9339
77.1098
99.6266
47.5519
1334396133452
40.0000
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
81.2447
68.7055
99.3827
61.1200
48322048330
0.0000
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
91.7821
85.1027
99.5992
26.0741
4978749722
100.0000
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
88.8331
79.9097
100.0000
43.6306
3548935400
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_triTR_51to200*
83.2653
71.8310
99.0291
55.4113
1024010210
0.0000
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_triTR_51to200het
48.4848
33.3333
88.8889
88.3117
816810
0.0000
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
87.2093
77.3196
100.0000
33.0357
75227500
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
95.0000
90.4762
100.0000
54.7619
1921900
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_triTR_gt200*
0.0000
0.0000
0.0000
00000
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_triTR_gt200het
0.0000
0.0000
0.0000
00000
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
gduggal-bwaplatINDELD6_15lowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
gduggal-bwaplatINDELD6_15map_l100_m0_e0*
72.3926
57.2816
98.3333
96.0186
59445910
0.0000
gduggal-bwaplatINDELD6_15map_l100_m0_e0het
74.2268
60.0000
97.2973
96.7965
36243610
0.0000
gduggal-bwaplatINDELD6_15map_l100_m0_e0hetalt
68.9655
52.6316
100.0000
94.0828
1091000
gduggal-bwaplatINDELD6_15map_l100_m0_e0homalt
70.2703
54.1667
100.0000
92.8962
13111300
gduggal-bwaplatINDELD6_15map_l100_m1_e0*
76.5957
62.7907
98.1818
93.8133
1629616231
33.3333
gduggal-bwaplatINDELD6_15map_l100_m1_e0het
80.0000
68.2540
96.6292
95.5366
86408631
33.3333
gduggal-bwaplatINDELD6_15map_l100_m1_e0hetalt
65.3465
48.5294
100.0000
89.8773
33353300
gduggal-bwaplatINDELD6_15map_l100_m1_e0homalt
80.3738
67.1875
100.0000
87.6081
43214300