PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36101-36150 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | * | map_l250_m2_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.5680 | 2 | 4 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m2_e0 | homalt | 55.3459 | 38.2609 | 100.0000 | 98.0304 | 44 | 71 | 44 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m2_e1 | * | 58.8983 | 41.7417 | 100.0000 | 98.8871 | 139 | 194 | 139 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m2_e1 | het | 60.7261 | 43.6019 | 100.0000 | 99.0542 | 92 | 119 | 92 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m2_e1 | hetalt | 50.0000 | 33.3333 | 100.0000 | 99.5763 | 2 | 4 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_l250_m2_e1 | homalt | 55.9006 | 38.7931 | 100.0000 | 98.0358 | 45 | 71 | 45 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | map_siren | * | 85.3786 | 75.0202 | 99.0556 | 89.6958 | 5559 | 1851 | 5559 | 53 | 26 | 49.0566 | |
| gduggal-bwaplat | INDEL | * | map_siren | het | 87.4010 | 78.3274 | 98.8522 | 90.8215 | 3531 | 977 | 3531 | 41 | 15 | 36.5854 | |
| gduggal-bwaplat | INDEL | * | map_siren | hetalt | 69.1293 | 53.0364 | 99.2424 | 95.1860 | 131 | 116 | 131 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | map_siren | homalt | 83.1471 | 71.4501 | 99.4235 | 85.0984 | 1897 | 758 | 1897 | 11 | 10 | 90.9091 | |
| gduggal-bwaplat | INDEL | * | segdup | * | 94.1537 | 89.4757 | 99.3478 | 96.2604 | 2287 | 269 | 2285 | 15 | 9 | 60.0000 | |
| gduggal-bwaplat | INDEL | * | segdup | het | 93.7455 | 88.9495 | 99.0881 | 97.0073 | 1304 | 162 | 1304 | 12 | 6 | 50.0000 | |
| gduggal-bwaplat | INDEL | * | segdup | hetalt | 85.0838 | 74.6154 | 98.9691 | 96.9725 | 97 | 33 | 96 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | segdup | homalt | 95.8873 | 92.2917 | 99.7745 | 93.8089 | 886 | 74 | 885 | 2 | 2 | 100.0000 | |
| gduggal-bwaplat | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9980 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9973 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | * | tech_badpromoters | * | 75.4098 | 60.5263 | 100.0000 | 71.4286 | 46 | 30 | 46 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | tech_badpromoters | het | 80.0000 | 66.6667 | 100.0000 | 72.3404 | 26 | 13 | 26 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | tech_badpromoters | hetalt | 66.6667 | 50.0000 | 100.0000 | 71.4286 | 2 | 2 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | * | tech_badpromoters | homalt | 70.5882 | 54.5455 | 100.0000 | 70.0000 | 18 | 15 | 18 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | HG002complexvar | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | HG002compoundhet | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | HG002compoundhet | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | decoy | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | decoy | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | decoy | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | func_cds | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | func_cds | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | func_cds | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwaplat | INDEL | C16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||