PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35551-35600 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | D1_5 | map_siren | het | 88.8512 | 80.5007 | 99.1347 | 90.4602 | 1833 | 444 | 1833 | 16 | 4 | 25.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_siren | hetalt | 75.9124 | 61.9048 | 98.1132 | 96.3423 | 52 | 32 | 52 | 1 | 1 | 100.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | map_siren | homalt | 85.0834 | 74.2295 | 99.6552 | 84.5085 | 867 | 301 | 867 | 3 | 2 | 66.6667 | |
| gduggal-bwaplat | INDEL | D1_5 | segdup | * | 95.9962 | 92.3844 | 99.9019 | 96.4456 | 1019 | 84 | 1018 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | segdup | het | 96.4899 | 93.3526 | 99.8454 | 96.8946 | 646 | 46 | 646 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D1_5 | segdup | hetalt | 86.9565 | 76.9231 | 100.0000 | 97.6449 | 40 | 12 | 39 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | segdup | homalt | 96.2428 | 92.7577 | 100.0000 | 94.6099 | 333 | 26 | 333 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9958 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9943 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D1_5 | tech_badpromoters | * | 77.4194 | 63.1579 | 100.0000 | 62.5000 | 12 | 7 | 12 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | tech_badpromoters | het | 76.9231 | 62.5000 | 100.0000 | 76.1905 | 5 | 3 | 5 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | tech_badpromoters | hetalt | 66.6667 | 50.0000 | 100.0000 | 0.0000 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D1_5 | tech_badpromoters | homalt | 80.0000 | 66.6667 | 100.0000 | 40.0000 | 6 | 3 | 6 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | * | * | 86.9684 | 78.1121 | 98.0899 | 65.2244 | 20381 | 5711 | 20387 | 397 | 273 | 68.7657 | |
| gduggal-bwaplat | INDEL | D6_15 | * | het | 87.6003 | 79.2874 | 97.8603 | 73.1960 | 9191 | 2401 | 9193 | 201 | 85 | 42.2886 | |
| gduggal-bwaplat | INDEL | D6_15 | * | hetalt | 82.8017 | 71.8008 | 97.7833 | 50.4460 | 5869 | 2305 | 5867 | 133 | 131 | 98.4962 | |
| gduggal-bwaplat | INDEL | D6_15 | * | homalt | 90.8801 | 84.1132 | 98.8312 | 57.2595 | 5321 | 1005 | 5327 | 63 | 57 | 90.4762 | |
| gduggal-bwaplat | INDEL | D6_15 | HG002complexvar | * | 83.5998 | 73.9721 | 96.1087 | 66.0264 | 3922 | 1380 | 3927 | 159 | 104 | 65.4088 | |
| gduggal-bwaplat | INDEL | D6_15 | HG002complexvar | het | 81.8591 | 70.8654 | 96.8901 | 67.2923 | 2211 | 909 | 2212 | 71 | 24 | 33.8028 | |
| gduggal-bwaplat | INDEL | D6_15 | HG002complexvar | hetalt | 82.3891 | 72.0632 | 96.1691 | 62.5248 | 730 | 283 | 728 | 29 | 27 | 93.1034 | |
| gduggal-bwaplat | INDEL | D6_15 | HG002complexvar | homalt | 88.8329 | 83.9179 | 94.3595 | 65.4443 | 981 | 188 | 987 | 59 | 53 | 89.8305 | |
| gduggal-bwaplat | INDEL | D6_15 | HG002compoundhet | * | 81.3435 | 69.7154 | 97.6272 | 45.9650 | 6296 | 2735 | 6295 | 153 | 109 | 71.2418 | |
| gduggal-bwaplat | INDEL | D6_15 | HG002compoundhet | het | 62.5277 | 49.4159 | 85.1107 | 78.7243 | 423 | 433 | 423 | 74 | 34 | 45.9459 | |
| gduggal-bwaplat | INDEL | D6_15 | HG002compoundhet | hetalt | 83.4699 | 71.8317 | 99.6086 | 36.1235 | 5855 | 2296 | 5853 | 23 | 22 | 95.6522 | |
| gduggal-bwaplat | INDEL | D6_15 | HG002compoundhet | homalt | 37.8738 | 75.0000 | 25.3333 | 81.1558 | 18 | 6 | 19 | 56 | 53 | 94.6429 | |
| gduggal-bwaplat | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9649 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D6_15 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.3789 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwaplat | INDEL | D6_15 | func_cds | * | 91.1392 | 83.7209 | 100.0000 | 64.3564 | 36 | 7 | 36 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | func_cds | het | 94.5455 | 89.6552 | 100.0000 | 62.8571 | 26 | 3 | 26 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | func_cds | homalt | 80.0000 | 66.6667 | 100.0000 | 68.0000 | 8 | 4 | 8 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 67.9939 | 52.5579 | 96.2669 | 70.6277 | 2065 | 1864 | 2063 | 80 | 56 | 70.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 62.3378 | 47.0343 | 92.4025 | 85.6385 | 452 | 509 | 450 | 37 | 14 | 37.8378 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 67.9381 | 51.9442 | 98.1629 | 49.9600 | 1229 | 1137 | 1229 | 23 | 22 | 95.6522 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 76.3419 | 63.7874 | 95.0495 | 71.2046 | 384 | 218 | 384 | 20 | 20 | 100.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 83.3333 | 83.3333 | 83.3333 | 98.4085 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 85.7143 | 100.0000 | 75.0000 | 98.6111 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 66.6667 | 50.0000 | 100.0000 | 96.8750 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 98.2456 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 83.7356 | 73.4530 | 97.3658 | 70.5818 | 11787 | 4260 | 11791 | 319 | 236 | 73.9812 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 79.0601 | 66.9823 | 96.4515 | 82.5174 | 3749 | 1848 | 3751 | 138 | 63 | 45.6522 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 85.5560 | 76.1304 | 97.6455 | 49.9717 | 5186 | 1626 | 5184 | 125 | 123 | 98.4000 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 87.1382 | 78.3947 | 98.0769 | 64.9494 | 2852 | 786 | 2856 | 56 | 50 | 89.2857 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 81.4087 | 70.0526 | 97.1590 | 70.4588 | 12379 | 5292 | 12380 | 362 | 254 | 70.1657 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 76.5888 | 63.9069 | 95.5499 | 83.7077 | 3736 | 2110 | 3736 | 174 | 72 | 41.3793 | |
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 82.6140 | 71.5225 | 97.7770 | 46.1187 | 5764 | 2295 | 5762 | 131 | 129 | 98.4733 | |