PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34601-34650 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D1_5 | HG002complexvar | hetalt | 91.5873 | 87.6479 | 95.8974 | 82.7281 | 1185 | 167 | 561 | 24 | 24 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | HG002complexvar | homalt | 98.4856 | 98.5186 | 98.4525 | 57.9745 | 10441 | 157 | 10434 | 164 | 151 | 92.0732 | |
| gduggal-bwafb | INDEL | D1_5 | HG002compoundhet | * | 91.0728 | 88.7045 | 93.5709 | 64.7882 | 10853 | 1382 | 11658 | 801 | 716 | 89.3883 | |
| gduggal-bwafb | INDEL | D1_5 | HG002compoundhet | het | 94.6747 | 91.3773 | 98.2190 | 47.8412 | 1579 | 149 | 7831 | 142 | 74 | 52.1127 | |
| gduggal-bwafb | INDEL | D1_5 | HG002compoundhet | hetalt | 93.3119 | 88.0482 | 99.2450 | 76.1026 | 8995 | 1221 | 3549 | 27 | 27 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | HG002compoundhet | homalt | 46.3350 | 95.8763 | 30.5495 | 82.2716 | 279 | 12 | 278 | 632 | 615 | 97.3101 | |
| gduggal-bwafb | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9676 | 4 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9726 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | decoy | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9426 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | func_cds | * | 98.7421 | 98.7421 | 98.7421 | 37.1542 | 157 | 2 | 157 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D1_5 | func_cds | het | 98.8372 | 100.0000 | 97.7011 | 43.1373 | 85 | 0 | 85 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D1_5 | func_cds | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D1_5 | func_cds | homalt | 98.6301 | 97.2973 | 100.0000 | 27.2727 | 72 | 2 | 72 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 86.8762 | 81.9779 | 92.3970 | 60.2527 | 3266 | 718 | 3342 | 275 | 210 | 76.3636 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 89.0929 | 83.6170 | 95.3363 | 63.5012 | 1179 | 231 | 1942 | 95 | 38 | 40.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 84.7595 | 74.5335 | 98.2379 | 37.2350 | 1358 | 464 | 669 | 12 | 12 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 88.4419 | 96.9415 | 81.3126 | 63.0649 | 729 | 23 | 731 | 168 | 160 | 95.2381 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.2381 | 90.9091 | 100.0000 | 99.3857 | 10 | 1 | 10 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 93.3333 | 87.5000 | 100.0000 | 99.2467 | 7 | 1 | 8 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.6296 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 97.7831 | 96.8990 | 98.6834 | 73.3610 | 62433 | 1998 | 63262 | 844 | 717 | 84.9526 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.3040 | 97.2229 | 99.4094 | 71.0102 | 32313 | 923 | 38374 | 228 | 113 | 49.5614 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 94.5232 | 90.1786 | 99.3077 | 80.7697 | 8383 | 913 | 3156 | 22 | 22 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.2904 | 99.2602 | 97.3394 | 75.4562 | 21737 | 162 | 21732 | 594 | 582 | 97.9798 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 94.7146 | 92.7089 | 96.8091 | 59.8061 | 29118 | 2290 | 29975 | 988 | 774 | 78.3401 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 95.6799 | 93.0581 | 98.4538 | 59.4166 | 12802 | 955 | 19039 | 299 | 108 | 36.1204 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 92.7620 | 87.2242 | 99.0507 | 45.1542 | 8104 | 1187 | 2713 | 26 | 26 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 95.2994 | 98.2297 | 92.5388 | 63.5670 | 8212 | 148 | 8223 | 663 | 640 | 96.5309 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.3524 | 95.1444 | 95.5614 | 69.5669 | 725 | 37 | 732 | 34 | 14 | 41.1765 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.0905 | 95.4023 | 94.7808 | 71.1793 | 415 | 20 | 454 | 25 | 5 | 20.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 87.3162 | 82.6087 | 92.5926 | 73.5294 | 57 | 12 | 25 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.6834 | 98.0620 | 97.3077 | 65.4714 | 253 | 5 | 253 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.3683 | 10 | 0 | 10 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.2195 | 7 | 0 | 8 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.6248 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 97.7687 | 97.6654 | 97.8723 | 76.4322 | 1506 | 36 | 1518 | 33 | 15 | 45.4545 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.5047 | 97.6139 | 97.3958 | 75.5476 | 900 | 22 | 935 | 25 | 7 | 28.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 93.6879 | 91.8919 | 95.5556 | 85.9375 | 68 | 6 | 43 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.7176 | 98.5348 | 98.9011 | 76.6167 | 538 | 8 | 540 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.6328 | 98.1185 | 99.1525 | 79.5691 | 1043 | 20 | 1053 | 9 | 5 | 55.5556 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.4084 | 97.8691 | 98.9537 | 78.0007 | 643 | 14 | 662 | 7 | 3 | 42.8571 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.2222 | 94.5946 | 100.0000 | 90.6615 | 35 | 2 | 24 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.1863 | 98.9160 | 99.4580 | 80.5789 | 365 | 4 | 367 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 86.1765 | 80.9208 | 92.1623 | 55.9146 | 1951 | 460 | 1999 | 170 | 145 | 85.2941 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 87.7499 | 80.8367 | 95.9562 | 58.8989 | 599 | 142 | 1139 | 48 | 25 | 52.0833 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 86.1756 | 76.2974 | 98.9919 | 34.4782 | 985 | 306 | 491 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 85.1147 | 96.8338 | 75.9259 | 61.8824 | 367 | 12 | 369 | 117 | 115 | 98.2906 | |