PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34551-34600 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m1_e0 | * | 81.4815 | 73.3333 | 91.6667 | 92.2581 | 11 | 4 | 11 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m1_e0 | het | 88.0000 | 78.5714 | 100.0000 | 86.4198 | 11 | 3 | 11 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 98.6486 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m2_e0 | * | 83.8710 | 76.4706 | 92.8571 | 91.5663 | 13 | 4 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m2_e0 | het | 89.6552 | 81.2500 | 100.0000 | 85.5556 | 13 | 3 | 13 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 98.6842 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m2_e1 | * | 81.2500 | 72.2222 | 92.8571 | 91.7160 | 13 | 5 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m2_e1 | het | 89.6552 | 81.2500 | 100.0000 | 85.7143 | 13 | 3 | 13 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 2 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 98.7013 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 97.5000 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 94.7368 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m0_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m1_e0 | * | 75.0000 | 75.0000 | 75.0000 | 95.3488 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m1_e0 | het | 100.0000 | 100.0000 | 100.0000 | 92.6829 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m1_e0 | homalt | 0.0000 | 0.0000 | 97.7778 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m2_e0 | * | 80.0000 | 80.0000 | 80.0000 | 94.6237 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m2_e0 | het | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 66.6667 | 100.0000 | 50.0000 | 95.8333 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m2_e1 | * | 80.0000 | 80.0000 | 80.0000 | 94.7368 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m2_e1 | het | 100.0000 | 100.0000 | 100.0000 | 93.6170 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 66.6667 | 100.0000 | 50.0000 | 95.8333 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_siren | * | 77.2358 | 66.4336 | 92.2330 | 84.8529 | 95 | 48 | 95 | 8 | 7 | 87.5000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_siren | het | 83.1234 | 76.9231 | 90.4110 | 81.1370 | 60 | 18 | 66 | 7 | 6 | 85.7143 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_siren | hetalt | 52.3810 | 35.4839 | 100.0000 | 73.6842 | 11 | 20 | 5 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_siren | homalt | 81.3559 | 70.5882 | 96.0000 | 90.8759 | 24 | 10 | 24 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | segdup | * | 86.0819 | 79.3103 | 94.1176 | 91.1917 | 46 | 12 | 48 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | segdup | het | 87.4904 | 81.0811 | 95.0000 | 89.3899 | 30 | 7 | 38 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | segdup | hetalt | 66.6667 | 100.0000 | 6 | 3 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D16_PLUS | segdup | homalt | 86.9565 | 83.3333 | 90.9091 | 94.1489 | 10 | 2 | 10 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D16_PLUS | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D16_PLUS | tech_badpromoters | * | 85.7143 | 75.0000 | 100.0000 | 40.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | tech_badpromoters | het | 85.7143 | 75.0000 | 100.0000 | 25.0000 | 3 | 1 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | D16_PLUS | tech_badpromoters | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D1_5 | * | * | 98.5809 | 98.0538 | 99.1138 | 59.5290 | 143889 | 2856 | 144727 | 1294 | 903 | 69.7836 | |
| gduggal-bwafb | INDEL | D1_5 | * | het | 98.9590 | 98.4961 | 99.4263 | 56.5657 | 86257 | 1317 | 92550 | 534 | 170 | 31.8352 | |
| gduggal-bwafb | INDEL | D1_5 | * | hetalt | 93.2065 | 88.0527 | 99.0011 | 79.2540 | 9021 | 1224 | 3568 | 36 | 36 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | * | homalt | 98.9426 | 99.3562 | 98.5324 | 61.7935 | 48611 | 315 | 48609 | 724 | 697 | 96.2707 | |
| gduggal-bwafb | INDEL | D1_5 | HG002complexvar | * | 98.0343 | 97.0289 | 99.0607 | 56.8977 | 31743 | 972 | 31851 | 302 | 219 | 72.5166 | |
| gduggal-bwafb | INDEL | D1_5 | HG002complexvar | het | 98.1510 | 96.8794 | 99.4564 | 54.4051 | 20117 | 648 | 20856 | 114 | 44 | 38.5965 | |