PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34251-34300 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e0 | het | 92.3597 | 87.7863 | 97.4359 | 83.4921 | 115 | 16 | 152 | 4 | 1 | 25.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 71.6612 | 58.8235 | 91.6667 | 80.3279 | 40 | 28 | 11 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.8750 | 95.3846 | 98.4127 | 89.8387 | 62 | 3 | 62 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e1 | * | 88.0846 | 80.3636 | 97.4468 | 85.8519 | 221 | 54 | 229 | 6 | 3 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e1 | het | 91.7507 | 86.6667 | 97.4684 | 83.5588 | 117 | 18 | 154 | 4 | 1 | 25.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 69.8368 | 56.1644 | 92.3077 | 80.3030 | 41 | 32 | 12 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m2_e1 | homalt | 96.1832 | 94.0299 | 98.4375 | 89.9054 | 63 | 4 | 63 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m0_e0 | * | 92.4000 | 89.3617 | 95.6522 | 92.1098 | 42 | 5 | 44 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m0_e0 | het | 93.2102 | 89.6552 | 97.0588 | 89.8204 | 26 | 3 | 33 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 83.3333 | 100.0000 | 5 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D6_15 | map_l125_m0_e0 | homalt | 91.6667 | 91.6667 | 91.6667 | 94.8936 | 11 | 1 | 11 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m1_e0 | * | 94.7920 | 92.3077 | 97.4138 | 88.3300 | 108 | 9 | 113 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m1_e0 | het | 94.7694 | 92.1875 | 97.5000 | 85.8156 | 59 | 5 | 78 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 90.6250 | 17 | 2 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l125_m1_e0 | homalt | 95.5224 | 94.1176 | 96.9697 | 91.7085 | 32 | 2 | 32 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e0 | * | 94.7418 | 92.0635 | 97.5806 | 88.6343 | 116 | 10 | 121 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e0 | het | 94.5127 | 91.5493 | 97.6744 | 86.4139 | 65 | 6 | 84 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 94.4444 | 89.4737 | 100.0000 | 91.4286 | 17 | 2 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e0 | homalt | 95.7746 | 94.4444 | 97.1429 | 91.7258 | 34 | 2 | 34 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e1 | * | 94.4016 | 91.4062 | 97.6000 | 88.7691 | 117 | 11 | 122 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e1 | het | 94.5127 | 91.5493 | 97.6744 | 86.6460 | 65 | 6 | 84 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 91.8919 | 85.0000 | 100.0000 | 92.1053 | 17 | 3 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e1 | homalt | 95.8904 | 94.5946 | 97.2222 | 91.6473 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m0_e0 | * | 93.9335 | 93.7500 | 94.1176 | 92.9752 | 30 | 2 | 32 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m0_e0 | het | 95.6438 | 95.0000 | 96.2963 | 89.8496 | 19 | 1 | 26 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 5 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D6_15 | map_l150_m0_e0 | homalt | 85.7143 | 85.7143 | 85.7143 | 96.6019 | 6 | 1 | 6 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m1_e0 | * | 95.1788 | 93.1507 | 97.2973 | 90.6210 | 68 | 5 | 72 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m1_e0 | het | 96.3702 | 94.8718 | 97.9167 | 89.0411 | 37 | 2 | 47 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 95.6522 | 7 | 1 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l150_m1_e0 | homalt | 94.1176 | 92.3077 | 96.0000 | 92.3780 | 24 | 2 | 24 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e0 | * | 95.0594 | 92.6829 | 97.5610 | 90.7240 | 76 | 6 | 80 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e0 | het | 95.7563 | 93.4783 | 98.1481 | 89.2000 | 43 | 3 | 53 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 95.8333 | 7 | 1 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e0 | homalt | 94.5455 | 92.8571 | 96.2963 | 92.5000 | 26 | 2 | 26 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e1 | * | 94.6014 | 91.7647 | 97.6190 | 90.6977 | 78 | 7 | 82 | 2 | 1 | 50.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e1 | het | 95.8451 | 93.6170 | 98.1818 | 89.2578 | 44 | 3 | 54 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 87.5000 | 77.7778 | 100.0000 | 96.1538 | 7 | 2 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e1 | homalt | 94.7368 | 93.1034 | 96.4286 | 92.3288 | 27 | 2 | 27 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l250_m0_e0 | * | 83.3333 | 83.3333 | 83.3333 | 97.6471 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l250_m0_e0 | het | 88.8889 | 100.0000 | 80.0000 | 95.9677 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D6_15 | map_l250_m0_e0 | homalt | 66.6667 | 50.0000 | 100.0000 | 99.2063 | 1 | 1 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l250_m1_e0 | * | 91.4286 | 88.8889 | 94.1176 | 96.2306 | 16 | 2 | 16 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l250_m1_e0 | het | 96.0000 | 100.0000 | 92.3077 | 94.6281 | 11 | 0 | 12 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l250_m1_e0 | hetalt | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D6_15 | map_l250_m1_e0 | homalt | 88.8889 | 80.0000 | 100.0000 | 97.9592 | 4 | 1 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | map_l250_m2_e0 | * | 93.0233 | 90.9091 | 95.2381 | 95.9615 | 20 | 2 | 20 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l250_m2_e0 | het | 96.7742 | 100.0000 | 93.7500 | 94.4251 | 14 | 0 | 15 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l250_m2_e0 | hetalt | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||