PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
34101-34150 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.0882 | 13 | 0 | 13 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l250_m1_e0 | * | 97.6471 | 97.0760 | 98.2249 | 95.1297 | 166 | 5 | 166 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m1_e0 | het | 96.8326 | 96.3964 | 97.2727 | 94.8526 | 107 | 4 | 107 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.2973 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l250_m1_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.4726 | 57 | 0 | 57 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l250_m2_e0 | * | 97.8142 | 97.2826 | 98.3516 | 95.3737 | 179 | 5 | 179 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m2_e0 | het | 97.0954 | 96.6942 | 97.5000 | 95.0556 | 117 | 4 | 117 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.7273 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.7717 | 60 | 0 | 60 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l250_m2_e1 | * | 97.8261 | 97.2973 | 98.3607 | 95.4602 | 180 | 5 | 180 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m2_e1 | het | 97.1193 | 96.7213 | 97.5207 | 95.1210 | 118 | 4 | 118 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.8022 | 2 | 1 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.8904 | 60 | 0 | 60 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | map_siren | * | 98.1690 | 98.0164 | 98.3220 | 81.5743 | 3459 | 70 | 3457 | 59 | 15 | 25.4237 | |
| gduggal-bwafb | INDEL | D1_5 | map_siren | het | 98.2729 | 98.2872 | 98.2586 | 80.4710 | 2238 | 39 | 2257 | 40 | 2 | 5.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_siren | hetalt | 84.8684 | 75.0000 | 97.7273 | 92.9487 | 63 | 21 | 43 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_siren | homalt | 98.8048 | 99.1438 | 98.4681 | 82.4522 | 1158 | 10 | 1157 | 18 | 12 | 66.6667 | |
| gduggal-bwafb | INDEL | D1_5 | segdup | * | 99.0456 | 98.6401 | 99.4545 | 94.8352 | 1088 | 15 | 1094 | 6 | 1 | 16.6667 | |
| gduggal-bwafb | INDEL | D1_5 | segdup | het | 98.9321 | 98.5549 | 99.3122 | 94.6465 | 682 | 10 | 722 | 5 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | segdup | hetalt | 94.1742 | 94.2308 | 94.1176 | 97.6902 | 49 | 3 | 16 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D1_5 | segdup | homalt | 99.7207 | 99.4429 | 100.0000 | 94.9012 | 357 | 2 | 356 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9942 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9910 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 40.6250 | 19 | 0 | 19 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 41.1765 | 8 | 0 | 10 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 40.0000 | 9 | 0 | 9 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | * | * | 94.1659 | 91.7408 | 96.7228 | 49.8237 | 23937 | 2155 | 25057 | 849 | 794 | 93.5218 | |
| gduggal-bwafb | INDEL | D6_15 | * | het | 96.0906 | 93.5300 | 98.7954 | 45.4106 | 10842 | 750 | 17633 | 215 | 165 | 76.7442 | |
| gduggal-bwafb | INDEL | D6_15 | * | hetalt | 90.9853 | 84.6464 | 98.3504 | 52.1249 | 6919 | 1255 | 1252 | 21 | 21 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | * | homalt | 94.1794 | 97.6288 | 90.9654 | 58.3129 | 6176 | 150 | 6172 | 613 | 608 | 99.1843 | |
| gduggal-bwafb | INDEL | D6_15 | HG002complexvar | * | 93.2387 | 90.0604 | 96.6496 | 53.7803 | 4775 | 527 | 4904 | 170 | 143 | 84.1176 | |
| gduggal-bwafb | INDEL | D6_15 | HG002complexvar | het | 93.9461 | 89.7756 | 98.5230 | 50.1907 | 2801 | 319 | 3602 | 54 | 30 | 55.5556 | |
| gduggal-bwafb | INDEL | D6_15 | HG002complexvar | hetalt | 88.4177 | 83.7117 | 93.6842 | 66.0714 | 848 | 165 | 178 | 12 | 12 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | HG002complexvar | homalt | 93.8652 | 96.3216 | 91.5309 | 60.1040 | 1126 | 43 | 1124 | 104 | 101 | 97.1154 | |
| gduggal-bwafb | INDEL | D6_15 | HG002compoundhet | * | 88.7012 | 84.9518 | 92.7969 | 32.0774 | 7672 | 1359 | 8799 | 683 | 663 | 97.0717 | |
| gduggal-bwafb | INDEL | D6_15 | HG002compoundhet | het | 92.7842 | 87.3832 | 98.8969 | 23.0186 | 748 | 108 | 7531 | 84 | 67 | 79.7619 | |
| gduggal-bwafb | INDEL | D6_15 | HG002compoundhet | hetalt | 91.1254 | 84.6645 | 98.6540 | 40.8708 | 6901 | 1250 | 1246 | 17 | 17 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | HG002compoundhet | homalt | 7.0180 | 95.8333 | 3.6424 | 68.7371 | 23 | 1 | 22 | 582 | 579 | 99.4845 | |
| gduggal-bwafb | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9165 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | decoy | het | 0.0000 | 0.0000 | 100.0000 | 99.8913 | 0 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | decoy | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D6_15 | func_cds | * | 89.1566 | 86.0465 | 92.5000 | 51.8072 | 37 | 6 | 37 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | func_cds | het | 89.8273 | 89.6552 | 90.0000 | 47.3684 | 26 | 3 | 27 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D6_15 | func_cds | hetalt | 0.0000 | 50.0000 | 0.0000 | 0.0000 | 1 | 1 | 0 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | func_cds | homalt | 90.9091 | 83.3333 | 100.0000 | 61.5385 | 10 | 2 | 10 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 82.6406 | 75.4390 | 91.3622 | 46.4432 | 2964 | 965 | 3226 | 305 | 294 | 96.3934 | |