PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33851-33900 / 86044 show all | |||||||||||||||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6797 | 99.7436 | 99.6160 | 62.2679 | 7001 | 18 | 7004 | 27 | 15 | 55.5556 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.2609 | 5 | 0 | 5 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.6908 | 99.5369 | 99.8452 | 60.6918 | 3869 | 18 | 3869 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.7673 | 99.3559 | 98.1857 | 45.9987 | 7404 | 48 | 7414 | 137 | 23 | 16.7883 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2925 | 99.2749 | 97.3294 | 48.4124 | 4655 | 34 | 4665 | 128 | 17 | 13.2812 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.9091 | 100.0000 | 83.3333 | 64.7059 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6007 | 99.4924 | 99.7093 | 41.1337 | 2744 | 14 | 2744 | 8 | 5 | 62.5000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 79.5455 | 83.3333 | 76.0870 | 91.5905 | 35 | 7 | 35 | 11 | 1 | 9.0909 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 78.9474 | 83.3333 | 75.0000 | 90.5660 | 30 | 6 | 30 | 10 | 1 | 10.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 83.3333 | 83.3333 | 83.3333 | 95.0413 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.5239 | 99.8551 | 99.1949 | 41.9366 | 3445 | 5 | 3450 | 28 | 3 | 10.7143 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2813 | 99.8597 | 98.7097 | 43.7241 | 2135 | 3 | 2142 | 28 | 3 | 10.7143 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9237 | 99.8474 | 100.0000 | 38.6097 | 1309 | 2 | 1307 | 0 | 0 | ||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 50.0000 | 100.0000 | 33.3333 | 96.5517 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 50.0000 | 100.0000 | 33.3333 | 95.5882 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 88.8681 | 82.6087 | 96.1538 | 64.8649 | 76 | 16 | 75 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 88.1679 | 84.2975 | 92.4107 | 60.6327 | 204 | 38 | 207 | 17 | 16 | 94.1176 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 89.0400 | 86.8852 | 91.3043 | 57.9268 | 106 | 16 | 126 | 12 | 11 | 91.6667 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 82.4742 | 76.9231 | 88.8889 | 57.1429 | 40 | 12 | 24 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 90.6002 | 85.2941 | 96.6102 | 66.8539 | 58 | 10 | 57 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 63.9411 | 49.6269 | 89.8601 | 54.0931 | 266 | 270 | 257 | 29 | 29 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 60.3104 | 45.6376 | 88.8889 | 56.5341 | 68 | 81 | 136 | 17 | 17 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 65.3479 | 50.1377 | 93.8053 | 47.9263 | 182 | 181 | 106 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 70.5882 | 66.6667 | 75.0000 | 62.9630 | 16 | 8 | 15 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 79.4509 | 70.3322 | 91.2863 | 53.7682 | 2456 | 1036 | 1540 | 147 | 142 | 96.5986 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 77.0749 | 65.9030 | 92.8079 | 55.0487 | 489 | 253 | 942 | 73 | 69 | 94.5205 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 79.9416 | 70.8547 | 91.7021 | 52.3810 | 1799 | 740 | 431 | 39 | 39 | 100.0000 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 81.1184 | 79.6209 | 82.6733 | 50.0000 | 168 | 43 | 167 | 35 | 34 | 97.1429 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 81.7039 | 73.7672 | 91.5543 | 53.9843 | 2199 | 782 | 1290 | 119 | 114 | 95.7983 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 80.1285 | 70.1493 | 93.4180 | 55.0363 | 423 | 180 | 809 | 57 | 53 | 92.9825 | |
| gduggal-bwafb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 81.7356 | 74.1096 | 91.1111 | 54.0230 | 1623 | 567 | 328 | 32 | 32 | 100.0000 | |