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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 672 673 674 675 676 677 678 679 680 ... 1720 1721 » 33751-33800 / 86044 show all
gduggal-bwafb	SNP	ti	map_siren	het	99.0568	99.3219	98.7930	59.4400	61959	423	61963	757	131	17.3052
gduggal-bwafb	SNP	ti	map_siren	hetalt	99.1150	98.2456	100.0000	70.8333	56	1	56	0	0
gduggal-bwafb	SNP	ti	map_siren	homalt	99.7291	99.5253	99.9338	52.9575	37736	180	37736	25	14	56.0000
gduggal-bwafb	SNP	ti	segdup	*	99.0195	99.5086	98.5352	91.2837	19441	96	19441	289	16	5.5363
gduggal-bwafb	SNP	ti	segdup	het	98.5285	99.3516	97.7189	92.3400	11952	78	11952	279	6	2.1505
gduggal-bwafb	SNP	ti	segdup	hetalt	100.0000	100.0000	100.0000	99.1736	2	0	2	0	0
gduggal-bwafb	SNP	ti	segdup	homalt	99.8134	99.7602	99.8666	88.7165	7487	18	7487	10	10	100.0000
gduggal-bwafb	SNP	ti	segdupwithalt	*		0.0000		100.0000	0	0	0	0	0
gduggal-bwafb	SNP	ti	segdupwithalt	het		0.0000		100.0000	0	0	0	0	0
gduggal-bwafb	SNP	ti	segdupwithalt	hetalt		0.0000		100.0000	0	0	0	0	0
gduggal-bwafb	SNP	ti	segdupwithalt	homalt		0.0000		100.0000	0	0	0	0	0
gduggal-bwafb	SNP	ti	tech_badpromoters	*	99.4152	100.0000	98.8372	52.4862	85	0	85	1	0	0.0000
gduggal-bwafb	SNP	ti	tech_badpromoters	het	98.8764	100.0000	97.7778	57.1429	44	0	44	1	0	0.0000
gduggal-bwafb	SNP	ti	tech_badpromoters	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
gduggal-bwafb	SNP	ti	tech_badpromoters	homalt	100.0000	100.0000	100.0000	46.0526	41	0	41	0	0
gduggal-bwafb	SNP	tv	*	*	99.7254	99.8534	99.5978	25.3671	968276	1422	968379	3911	282	7.2104
gduggal-bwafb	SNP	tv	*	het	99.6077	99.8543	99.3624	27.5297	590842	862	590931	3792	213	5.6171
gduggal-bwafb	SNP	tv	*	hetalt	99.5989	99.7704	99.4279	53.2620	869	2	869	5	5	100.0000
gduggal-bwafb	SNP	tv	*	homalt	99.9109	99.8520	99.9697	21.5631	376565	558	376579	114	64	56.1404
gduggal-bwafb	SNP	tv	HG002complexvar	*	99.7871	99.7453	99.8289	23.3366	245528	627	245605	421	174	41.3302
gduggal-bwafb	SNP	tv	HG002complexvar	het	99.7366	99.7134	99.7598	23.4830	150302	432	150365	362	122	33.7017
gduggal-bwafb	SNP	tv	HG002complexvar	hetalt	99.3569	99.6774	99.0385	46.2069	309	1	309	3	3	100.0000
gduggal-bwafb	SNP	tv	HG002complexvar	homalt	99.8685	99.7960	99.9410	22.9952	94917	194	94931	56	49	87.5000
gduggal-bwafb	SNP	tv	HG002compoundhet	*	97.8192	99.1259	96.5465	53.1590	8845	78	8890	318	86	27.0440
gduggal-bwafb	SNP	tv	HG002compoundhet	het	96.4922	98.6946	94.3859	59.0165	4612	61	4657	277	52	18.7726
gduggal-bwafb	SNP	tv	HG002compoundhet	hetalt	99.8259	99.7680	99.8839	24.0741	860	2	860	1	1	100.0000
gduggal-bwafb	SNP	tv	HG002compoundhet	homalt	99.1913	99.5573	98.8280	47.3709	3373	15	3373	40	33	82.5000
gduggal-bwafb	SNP	tv	decoy	*		0.0000		100.0000	0	0	0	0	0
gduggal-bwafb	SNP	tv	decoy	het		0.0000		100.0000	0	0	0	0	0
gduggal-bwafb	SNP	tv	decoy	hetalt		0.0000		100.0000	0	0	0	0	0
gduggal-bwafb	SNP	tv	decoy	homalt		0.0000		100.0000	0	0	0	0	0
gduggal-bwafb	SNP	tv	func_cds	*	99.4763	99.9542	99.0029	37.0021	4369	2	4369	44	0	0.0000
gduggal-bwafb	SNP	tv	func_cds	het	99.1412	99.9247	98.3698	41.4914	2655	2	2655	44	0	0.0000
gduggal-bwafb	SNP	tv	func_cds	hetalt	100.0000	100.0000	100.0000	60.0000	10	0	10	0	0
gduggal-bwafb	SNP	tv	func_cds	homalt	100.0000	100.0000	100.0000	28.0101	1704	0	1704	0	0
gduggal-bwafb	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	94.6826	98.0211	91.5640	77.5938	1486	30	1487	137	13	9.4891
gduggal-bwafb	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	het	92.4977	97.4798	88.0000	79.7980	967	25	968	132	9	6.8182
gduggal-bwafb	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
gduggal-bwafb	SNP	tv	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	99.0458	99.0458	99.0458	70.6113	519	5	519	5	4	80.0000
gduggal-bwafb	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	*		0.0000		100.0000	0	0	0	0	0
gduggal-bwafb	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	het		0.0000		100.0000	0	0	0	0	0
gduggal-bwafb	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	hetalt		0.0000		100.0000	0	0	0	0	0
gduggal-bwafb	SNP	tv	lowcmp_AllRepeats_gt200bp_gt95identity_merged	homalt		0.0000		100.0000	0	0	0	0	0
gduggal-bwafb	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	98.8735	99.4653	98.2886	67.7942	27530	148	27568	480	97	20.2083
gduggal-bwafb	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.4793	99.5219	97.4583	69.5878	17484	84	17523	457	79	17.2867
gduggal-bwafb	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	hetalt	96.2963	100.0000	92.8571	85.5670	13	0	13	1	1	100.0000
gduggal-bwafb	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5732	99.3661	99.7812	63.9280	10033	64	10032	22	17	77.2727
gduggal-bwafb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	94.8642	95.2989	94.4335	80.6105	13886	685	13911	820	85	10.3659
gduggal-bwafb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	93.6596	95.7079	91.6972	82.3440	8741	392	8769	794	75	9.4458
gduggal-bwafb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	hetalt	100.0000	100.0000	100.0000	93.8525	15	0	15	0	0

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