PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33701-33750 / 86044 show all | |||||||||||||||
| gduggal-bwafb | SNP | ti | map_l100_m2_e1 | homalt | 99.5933 | 99.3025 | 99.8858 | 63.9101 | 18365 | 129 | 18365 | 21 | 13 | 61.9048 | |
| gduggal-bwafb | SNP | ti | map_l125_m0_e0 | * | 98.6735 | 98.5034 | 98.8442 | 76.2289 | 12571 | 191 | 12571 | 147 | 47 | 31.9728 | |
| gduggal-bwafb | SNP | ti | map_l125_m0_e0 | het | 98.2879 | 98.3057 | 98.2700 | 78.1213 | 8123 | 140 | 8123 | 143 | 44 | 30.7692 | |
| gduggal-bwafb | SNP | ti | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.9524 | 8 | 0 | 8 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l125_m0_e0 | homalt | 99.3844 | 98.8644 | 99.9100 | 71.6564 | 4440 | 51 | 4440 | 4 | 3 | 75.0000 | |
| gduggal-bwafb | SNP | ti | map_l125_m1_e0 | * | 98.9304 | 98.8478 | 99.0132 | 72.1354 | 28997 | 338 | 28997 | 289 | 84 | 29.0657 | |
| gduggal-bwafb | SNP | ti | map_l125_m1_e0 | het | 98.5889 | 98.6861 | 98.4920 | 74.2606 | 18026 | 240 | 18026 | 276 | 77 | 27.8986 | |
| gduggal-bwafb | SNP | ti | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 70.3704 | 24 | 0 | 24 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l125_m1_e0 | homalt | 99.4956 | 99.1127 | 99.8814 | 67.6839 | 10947 | 98 | 10947 | 13 | 7 | 53.8462 | |
| gduggal-bwafb | SNP | ti | map_l125_m2_e0 | * | 98.9368 | 98.8697 | 99.0039 | 73.9957 | 29916 | 342 | 29916 | 301 | 85 | 28.2392 | |
| gduggal-bwafb | SNP | ti | map_l125_m2_e0 | het | 98.5978 | 98.7179 | 98.4780 | 75.9201 | 18634 | 242 | 18634 | 288 | 78 | 27.0833 | |
| gduggal-bwafb | SNP | ti | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.7368 | 24 | 0 | 24 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l125_m2_e0 | homalt | 99.5006 | 99.1196 | 99.8847 | 69.9640 | 11258 | 100 | 11258 | 13 | 7 | 53.8462 | |
| gduggal-bwafb | SNP | ti | map_l125_m2_e1 | * | 98.9476 | 98.8812 | 99.0140 | 74.0560 | 30227 | 342 | 30227 | 301 | 85 | 28.2392 | |
| gduggal-bwafb | SNP | ti | map_l125_m2_e1 | het | 98.6133 | 98.7321 | 98.4947 | 75.9784 | 18845 | 242 | 18845 | 288 | 78 | 27.0833 | |
| gduggal-bwafb | SNP | ti | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.7368 | 24 | 0 | 24 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l125_m2_e1 | homalt | 99.5050 | 99.1272 | 99.8857 | 70.0171 | 11358 | 100 | 11358 | 13 | 7 | 53.8462 | |
| gduggal-bwafb | SNP | ti | map_l150_m0_e0 | * | 98.4686 | 98.1555 | 98.7838 | 81.2749 | 7716 | 145 | 7716 | 95 | 36 | 37.8947 | |
| gduggal-bwafb | SNP | ti | map_l150_m0_e0 | het | 98.0450 | 97.9007 | 98.1897 | 82.8404 | 4990 | 107 | 4990 | 92 | 34 | 36.9565 | |
| gduggal-bwafb | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l150_m0_e0 | homalt | 99.2528 | 98.6237 | 99.8899 | 77.4057 | 2723 | 38 | 2723 | 3 | 2 | 66.6667 | |
| gduggal-bwafb | SNP | ti | map_l150_m1_e0 | * | 98.7276 | 98.5998 | 98.8556 | 76.3349 | 19436 | 276 | 19436 | 225 | 69 | 30.6667 | |
| gduggal-bwafb | SNP | ti | map_l150_m1_e0 | het | 98.3399 | 98.4074 | 98.2724 | 78.0641 | 12173 | 197 | 12173 | 214 | 63 | 29.4393 | |
| gduggal-bwafb | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 77.2727 | 15 | 0 | 15 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l150_m1_e0 | homalt | 99.3830 | 98.9218 | 99.8485 | 72.6540 | 7248 | 79 | 7248 | 11 | 6 | 54.5455 | |
| gduggal-bwafb | SNP | ti | map_l150_m2_e0 | * | 98.7457 | 98.6398 | 98.8519 | 77.9268 | 20233 | 279 | 20233 | 235 | 69 | 29.3617 | |
| gduggal-bwafb | SNP | ti | map_l150_m2_e0 | het | 98.3596 | 98.4551 | 98.2644 | 79.4915 | 12682 | 199 | 12682 | 224 | 63 | 28.1250 | |
| gduggal-bwafb | SNP | ti | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 15 | 0 | 15 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l150_m2_e0 | homalt | 99.3999 | 98.9496 | 99.8542 | 74.6089 | 7536 | 80 | 7536 | 11 | 6 | 54.5455 | |
| gduggal-bwafb | SNP | ti | map_l150_m2_e1 | * | 98.7513 | 98.6488 | 98.8540 | 78.0171 | 20443 | 280 | 20443 | 237 | 70 | 29.5359 | |
| gduggal-bwafb | SNP | ti | map_l150_m2_e1 | het | 98.3690 | 98.4710 | 98.2671 | 79.5893 | 12816 | 199 | 12816 | 226 | 64 | 28.3186 | |
| gduggal-bwafb | SNP | ti | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.2632 | 15 | 0 | 15 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l150_m2_e1 | homalt | 99.3993 | 98.9471 | 99.8557 | 74.6736 | 7612 | 81 | 7612 | 11 | 6 | 54.5455 | |
| gduggal-bwafb | SNP | ti | map_l250_m0_e0 | * | 97.5073 | 97.0803 | 97.9381 | 93.5330 | 1330 | 40 | 1330 | 28 | 9 | 32.1429 | |
| gduggal-bwafb | SNP | ti | map_l250_m0_e0 | het | 96.8331 | 96.5739 | 97.0936 | 93.7967 | 902 | 32 | 902 | 27 | 8 | 29.6296 | |
| gduggal-bwafb | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | ti | map_l250_m0_e0 | homalt | 98.9595 | 98.1651 | 99.7669 | 92.8560 | 428 | 8 | 428 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | ti | map_l250_m1_e0 | * | 97.9068 | 97.5541 | 98.2622 | 89.4468 | 4467 | 112 | 4467 | 79 | 24 | 30.3797 | |
| gduggal-bwafb | SNP | ti | map_l250_m1_e0 | het | 97.3192 | 97.2372 | 97.4013 | 90.0480 | 2886 | 82 | 2886 | 77 | 22 | 28.5714 | |
| gduggal-bwafb | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.1892 | 4 | 0 | 4 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l250_m1_e0 | homalt | 98.9956 | 98.1332 | 99.8733 | 88.0983 | 1577 | 30 | 1577 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | SNP | ti | map_l250_m2_e0 | * | 98.0365 | 97.7037 | 98.3715 | 89.9163 | 4893 | 115 | 4893 | 81 | 24 | 29.6296 | |
| gduggal-bwafb | SNP | ti | map_l250_m2_e0 | het | 97.4935 | 97.4186 | 97.5685 | 90.4134 | 3170 | 84 | 3170 | 79 | 22 | 27.8481 | |
| gduggal-bwafb | SNP | ti | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.0952 | 5 | 0 | 5 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l250_m2_e0 | homalt | 99.0487 | 98.2276 | 99.8837 | 88.8268 | 1718 | 31 | 1718 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | SNP | ti | map_l250_m2_e1 | * | 98.0431 | 97.7147 | 98.3737 | 89.9899 | 4960 | 116 | 4960 | 82 | 25 | 30.4878 | |
| gduggal-bwafb | SNP | ti | map_l250_m2_e1 | het | 97.5129 | 97.4538 | 97.5721 | 90.4931 | 3215 | 84 | 3215 | 80 | 23 | 28.7500 | |
| gduggal-bwafb | SNP | ti | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.0952 | 5 | 0 | 5 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l250_m2_e1 | homalt | 99.0324 | 98.1941 | 99.8852 | 88.8818 | 1740 | 32 | 1740 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | SNP | ti | map_siren | * | 99.3101 | 99.3981 | 99.2222 | 57.2359 | 99751 | 604 | 99755 | 782 | 145 | 18.5422 | |