PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33651-33700 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | * | decoy | * | 82.3529 | 70.0000 | 100.0000 | 99.9638 | 7 | 3 | 7 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | decoy | het | 66.6667 | 50.0000 | 100.0000 | 99.9731 | 3 | 3 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9253 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | func_cds | * | 95.8862 | 94.1573 | 97.6798 | 38.6040 | 419 | 26 | 421 | 10 | 8 | 80.0000 | |
| gduggal-bwafb | INDEL | * | func_cds | het | 94.3524 | 92.9907 | 95.7547 | 43.4667 | 199 | 15 | 203 | 9 | 7 | 77.7778 | |
| gduggal-bwafb | INDEL | * | func_cds | hetalt | 54.5455 | 60.0000 | 50.0000 | 50.0000 | 3 | 2 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | func_cds | homalt | 97.9684 | 96.0177 | 100.0000 | 32.8173 | 217 | 9 | 217 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 81.8128 | 74.8933 | 90.1411 | 58.1664 | 7544 | 2529 | 8942 | 978 | 867 | 88.6503 | |
| gduggal-bwafb | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 82.8200 | 73.8119 | 94.3324 | 59.6824 | 2982 | 1058 | 5892 | 354 | 254 | 71.7514 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.4458 | 98.9378 | 97.9586 | 49.7551 | 10618 | 114 | 10653 | 222 | 58 | 26.1261 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.0823 | 99.0065 | 97.1751 | 54.0902 | 6677 | 67 | 6708 | 195 | 42 | 21.5385 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 66.6667 | 100.0000 | 50.0000 | 75.0000 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.0824 | 98.8212 | 99.3451 | 39.8485 | 3940 | 47 | 3944 | 26 | 15 | 57.6923 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 74.7826 | 85.1485 | 66.6667 | 94.5791 | 86 | 15 | 82 | 41 | 9 | 21.9512 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 68.9127 | 81.8182 | 59.5238 | 95.2246 | 54 | 12 | 50 | 34 | 3 | 8.8235 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 86.4865 | 91.4286 | 82.0513 | 92.3228 | 32 | 3 | 32 | 7 | 6 | 85.7143 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3744 | 99.5648 | 99.1847 | 37.2000 | 3889 | 17 | 3893 | 32 | 7 | 21.8750 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1968 | 99.5561 | 98.8400 | 40.7302 | 2467 | 11 | 2471 | 29 | 6 | 20.6897 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6843 | 99.5795 | 99.7893 | 29.7830 | 1421 | 6 | 1421 | 3 | 1 | 33.3333 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 97.4074 | 8 | 0 | 7 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 97.8541 | 6 | 0 | 5 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 94.5946 | 2 | 0 | 2 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | SNP | ti | map_l100_m0_e0 | * | 98.8483 | 98.7506 | 98.9461 | 70.2347 | 21499 | 272 | 21500 | 229 | 69 | 30.1310 | |
| gduggal-bwafb | SNP | ti | map_l100_m0_e0 | het | 98.5173 | 98.5983 | 98.4365 | 72.6281 | 13787 | 196 | 13788 | 219 | 63 | 28.7671 | |
| gduggal-bwafb | SNP | ti | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.2712 | 14 | 0 | 14 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l100_m0_e0 | homalt | 99.4445 | 99.0224 | 99.8703 | 64.5919 | 7698 | 76 | 7698 | 10 | 6 | 60.0000 | |
| gduggal-bwafb | SNP | ti | map_l100_m1_e0 | * | 99.1029 | 99.1050 | 99.1009 | 66.4175 | 47502 | 429 | 47504 | 431 | 106 | 24.5940 | |
| gduggal-bwafb | SNP | ti | map_l100_m1_e0 | het | 98.8099 | 98.9880 | 98.6324 | 68.7421 | 29639 | 303 | 29641 | 411 | 94 | 22.8710 | |
| gduggal-bwafb | SNP | ti | map_l100_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.6364 | 29 | 0 | 29 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l100_m1_e0 | homalt | 99.5923 | 99.2984 | 99.8880 | 61.5927 | 17834 | 126 | 17834 | 20 | 12 | 60.0000 | |
| gduggal-bwafb | SNP | ti | map_l100_m2_e0 | * | 99.1045 | 99.1095 | 99.0994 | 68.4259 | 48525 | 436 | 48527 | 441 | 108 | 24.4898 | |
| gduggal-bwafb | SNP | ti | map_l100_m2_e0 | het | 98.8152 | 98.9975 | 98.6336 | 70.5993 | 30315 | 307 | 30317 | 420 | 95 | 22.6190 | |
| gduggal-bwafb | SNP | ti | map_l100_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.2066 | 30 | 0 | 30 | 0 | 0 | ||
| gduggal-bwafb | SNP | ti | map_l100_m2_e0 | homalt | 99.5892 | 99.2954 | 99.8846 | 63.9034 | 18180 | 129 | 18180 | 21 | 13 | 61.9048 | |
| gduggal-bwafb | SNP | ti | map_l100_m2_e1 | * | 99.1089 | 99.1189 | 99.0989 | 68.4487 | 49049 | 436 | 49051 | 446 | 108 | 24.2152 | |
| gduggal-bwafb | SNP | ti | map_l100_m2_e1 | het | 98.8201 | 99.0084 | 98.6326 | 70.6269 | 30653 | 307 | 30655 | 425 | 95 | 22.3529 | |
| gduggal-bwafb | SNP | ti | map_l100_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 74.5902 | 31 | 0 | 31 | 0 | 0 | ||