PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33601-33650 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 90.6667 | 82.9268 | 100.0000 | 53.4653 | 272 | 56 | 47 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 88.8877 | 89.1304 | 88.6463 | 58.2878 | 205 | 25 | 203 | 26 | 26 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 74.7922 | 62.5000 | 93.1034 | 51.7203 | 385 | 231 | 405 | 30 | 30 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 63.6016 | 46.9512 | 98.5507 | 57.2314 | 77 | 87 | 204 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 76.5432 | 62.0000 | 100.0000 | 30.8176 | 217 | 133 | 110 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 82.7273 | 89.2157 | 77.1186 | 54.2636 | 91 | 11 | 91 | 27 | 27 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 87.6416 | 80.8917 | 95.6204 | 51.7606 | 127 | 30 | 131 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 80.0693 | 68.8525 | 95.6522 | 51.5789 | 42 | 19 | 88 | 4 | 4 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 75.2137 | 86.2745 | 66.6667 | 57.1429 | 44 | 7 | 2 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 94.2529 | 91.1111 | 97.6190 | 51.7241 | 41 | 4 | 41 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 81.1268 | 69.5652 | 97.2973 | 43.0769 | 32 | 14 | 36 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 76.9231 | 62.5000 | 100.0000 | 50.0000 | 5 | 3 | 20 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 71.7949 | 56.0000 | 100.0000 | 0.0000 | 14 | 11 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 36.3636 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m0_e0 | * | 72.3404 | 60.7143 | 89.4737 | 90.1042 | 17 | 11 | 17 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m0_e0 | het | 78.7879 | 68.4211 | 92.8571 | 86.4078 | 13 | 6 | 13 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 4 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 80.0000 | 80.0000 | 94.2529 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m1_e0 | * | 67.1429 | 54.0230 | 88.6792 | 85.5978 | 47 | 40 | 47 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m1_e0 | het | 74.7073 | 63.0435 | 91.6667 | 81.4433 | 29 | 17 | 33 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 47.0588 | 30.7692 | 100.0000 | 63.6364 | 8 | 18 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 71.4286 | 66.6667 | 76.9231 | 92.0245 | 10 | 5 | 10 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e0 | * | 66.6667 | 53.3333 | 88.8889 | 86.2595 | 48 | 42 | 48 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e0 | het | 72.8311 | 60.4167 | 91.6667 | 82.9384 | 29 | 19 | 33 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 47.0588 | 30.7692 | 100.0000 | 63.6364 | 8 | 18 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 73.3333 | 68.7500 | 78.5714 | 91.8129 | 11 | 5 | 11 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e1 | * | 66.2338 | 52.5773 | 89.4737 | 85.6784 | 51 | 46 | 51 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e1 | het | 74.7082 | 62.7451 | 92.3077 | 81.8605 | 32 | 19 | 36 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 42.1053 | 26.6667 | 100.0000 | 63.6364 | 8 | 22 | 4 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 73.3333 | 68.7500 | 78.5714 | 91.8605 | 11 | 5 | 11 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m0_e0 | * | 86.9565 | 83.3333 | 90.9091 | 90.9091 | 10 | 2 | 10 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m0_e0 | het | 94.1176 | 88.8889 | 100.0000 | 87.3016 | 8 | 1 | 8 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 94.6429 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | * | * | 96.9474 | 95.5004 | 98.4390 | 56.3888 | 329039 | 15503 | 342492 | 5431 | 4691 | 86.3745 | |
| gduggal-bwafb | INDEL | * | * | het | 97.2465 | 95.6571 | 98.8897 | 54.7010 | 185702 | 8431 | 212773 | 2389 | 1710 | 71.5781 | |
| gduggal-bwafb | INDEL | * | * | hetalt | 87.6150 | 80.5643 | 96.0183 | 78.7583 | 20332 | 4905 | 6728 | 279 | 275 | 98.5663 | |
| gduggal-bwafb | INDEL | * | * | homalt | 98.0353 | 98.2688 | 97.8029 | 56.6087 | 123005 | 2167 | 122991 | 2763 | 2706 | 97.9370 | |
| gduggal-bwafb | INDEL | * | HG002complexvar | * | 96.4189 | 94.4813 | 98.4377 | 54.9407 | 72692 | 4246 | 74289 | 1179 | 1015 | 86.0899 | |
| gduggal-bwafb | INDEL | * | HG002complexvar | het | 96.3773 | 93.9496 | 98.9337 | 53.9146 | 43416 | 2796 | 46670 | 503 | 367 | 72.9622 | |
| gduggal-bwafb | INDEL | * | HG002complexvar | hetalt | 85.9574 | 79.3998 | 93.6957 | 80.8679 | 2937 | 762 | 1293 | 87 | 84 | 96.5517 | |
| gduggal-bwafb | INDEL | * | HG002complexvar | homalt | 97.6327 | 97.4544 | 97.8116 | 53.5251 | 26339 | 688 | 26326 | 589 | 564 | 95.7555 | |
| gduggal-bwafb | INDEL | * | HG002compoundhet | * | 86.4141 | 81.5955 | 91.8376 | 53.1940 | 24446 | 5514 | 37872 | 3366 | 3207 | 95.2763 | |
| gduggal-bwafb | INDEL | * | HG002compoundhet | het | 91.2904 | 85.5154 | 97.9020 | 36.8528 | 3501 | 593 | 30518 | 654 | 528 | 80.7339 | |
| gduggal-bwafb | INDEL | * | HG002compoundhet | hetalt | 88.3144 | 80.5679 | 97.7090 | 73.4740 | 20287 | 4893 | 6696 | 157 | 155 | 98.7261 | |
| gduggal-bwafb | INDEL | * | HG002compoundhet | homalt | 33.7522 | 95.9184 | 20.4793 | 75.1027 | 658 | 28 | 658 | 2555 | 2524 | 98.7867 | |