PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33551-33600 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 68.9517 | 64.3204 | 74.3017 | 60.0892 | 530 | 294 | 532 | 184 | 182 | 98.9130 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 71.8588 | 77.9279 | 66.6667 | 60.8225 | 346 | 98 | 362 | 181 | 179 | 98.8950 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 71.8310 | 89.4737 | 60.0000 | 70.5882 | 17 | 2 | 3 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 63.1380 | 46.2604 | 99.4048 | 57.0332 | 167 | 194 | 167 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 76.5595 | 74.4422 | 78.8009 | 51.4553 | 367 | 126 | 368 | 99 | 99 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 80.3613 | 90.7407 | 72.1127 | 50.6259 | 245 | 25 | 256 | 99 | 99 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.6522 | 91.6667 | 100.0000 | 80.0000 | 11 | 1 | 1 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 68.9441 | 52.6066 | 100.0000 | 53.3613 | 111 | 100 | 111 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 78.5045 | 69.6510 | 89.9365 | 50.9342 | 918 | 400 | 992 | 111 | 111 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 75.2156 | 61.3260 | 97.2393 | 52.0588 | 222 | 140 | 634 | 18 | 18 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 78.6771 | 64.8494 | 100.0000 | 41.7085 | 452 | 245 | 116 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 81.7737 | 94.2085 | 72.2388 | 51.3788 | 244 | 15 | 242 | 93 | 93 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 86.8145 | 81.4642 | 92.9171 | 53.5981 | 2615 | 595 | 2768 | 211 | 211 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 84.1219 | 73.6301 | 98.1006 | 47.7187 | 645 | 231 | 1911 | 37 | 37 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 87.9792 | 78.9116 | 99.4012 | 47.6489 | 1276 | 341 | 166 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 87.5847 | 96.7922 | 79.9769 | 63.6211 | 694 | 23 | 691 | 173 | 173 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 91.3518 | 88.3601 | 94.5531 | 56.1456 | 1708 | 225 | 1788 | 103 | 103 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 88.8144 | 80.8349 | 98.5418 | 47.2042 | 426 | 101 | 1284 | 19 | 19 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 92.8290 | 88.0297 | 98.1818 | 57.6923 | 831 | 113 | 54 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 90.5455 | 97.6190 | 84.4278 | 68.9032 | 451 | 11 | 450 | 83 | 83 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 82.5353 | 76.8626 | 89.1121 | 55.4494 | 3126 | 941 | 3282 | 401 | 398 | 99.2519 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 81.5250 | 73.7594 | 91.1183 | 51.9309 | 981 | 349 | 2257 | 220 | 217 | 98.6364 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 87.0389 | 78.1079 | 98.2759 | 48.3680 | 1288 | 361 | 171 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 80.7110 | 78.7684 | 82.7519 | 62.8376 | 857 | 231 | 854 | 178 | 178 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 81.8133 | 75.2350 | 89.6520 | 58.5736 | 3761 | 1238 | 3942 | 455 | 448 | 98.4615 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 80.6843 | 72.0726 | 91.6333 | 55.4102 | 1311 | 508 | 2749 | 251 | 244 | 97.2112 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 86.0000 | 76.2299 | 98.6425 | 50.7795 | 1472 | 459 | 218 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 80.5396 | 78.3026 | 82.9082 | 65.7841 | 978 | 271 | 975 | 201 | 201 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | * | 88.7546 | 84.9330 | 92.9364 | 52.1776 | 1522 | 270 | 1592 | 121 | 119 | 98.3471 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 87.0859 | 79.3103 | 96.5517 | 52.0850 | 483 | 126 | 1176 | 42 | 40 | 95.2381 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 91.8155 | 86.2245 | 98.1818 | 60.1449 | 676 | 108 | 54 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 86.4064 | 90.9774 | 82.2727 | 51.2195 | 363 | 36 | 362 | 78 | 78 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 75.9280 | 67.6190 | 86.5649 | 44.3027 | 497 | 238 | 567 | 88 | 88 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 76.2290 | 62.1302 | 98.6047 | 43.8642 | 105 | 64 | 424 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 75.8133 | 61.0478 | 100.0000 | 40.6250 | 268 | 171 | 19 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 74.4745 | 97.6378 | 60.1942 | 45.5026 | 124 | 3 | 124 | 82 | 82 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 87.3576 | 79.3103 | 97.2222 | 72.2008 | 69 | 18 | 70 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 86.1595 | 76.9231 | 97.9167 | 68.0000 | 40 | 12 | 47 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 80.0000 | 66.6667 | 100.0000 | 71.4286 | 8 | 4 | 2 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 93.3333 | 91.3043 | 95.4545 | 78.4314 | 21 | 2 | 21 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 66.5405 | 55.8824 | 82.2222 | 96.8062 | 38 | 30 | 37 | 8 | 8 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 59.4214 | 43.1818 | 95.2381 | 93.9481 | 19 | 25 | 20 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 61.5385 | 44.4444 | 100.0000 | 90.3226 | 4 | 5 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.9631 | 15 | 0 | 14 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 85.7428 | 78.4150 | 94.5813 | 55.1133 | 752 | 207 | 768 | 44 | 43 | 97.7273 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 80.2269 | 68.5786 | 96.6418 | 53.7532 | 275 | 126 | 518 | 18 | 17 | 94.4444 | |